Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25e10
         (557 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79755-8|CAB02113.1|  270|Caenorhabditis elegans Hypothetical pr...    31   0.56 
AF169201-1|AAF01678.1|  270|Caenorhabditis elegans CES-1 protein.      31   0.56 
AC006748-6|AAF60516.1|  582|Caenorhabditis elegans Hypothetical ...    29   2.3  
AC006748-5|AAX55685.1|  471|Caenorhabditis elegans Hypothetical ...    29   2.3  
Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical pr...    28   4.0  
Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical pr...    28   4.0  
AC006607-5|AAF60371.2|  640|Caenorhabditis elegans Hypothetical ...    27   6.9  
AF063007-1|AAC16430.2|  730|Caenorhabditis elegans Hypothetical ...    27   9.1  

>Z79755-8|CAB02113.1|  270|Caenorhabditis elegans Hypothetical
           protein F43G9.11 protein.
          Length = 270

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 19/77 (24%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
 Frame = +3

Query: 276 IDMLRSIIRRFKSTNNLSKK-PSDHYVVLCPKCYFVTSSEVSVAEYIEMHKNFNTKFADR 452
           +D L+++ RR     +L+KK PS H   +C KC    ++  +++ + + H+  ++  A +
Sbjct: 112 LDSLQNLDRR-----SLNKKGPSSHNRCVCDKCGKSYATTSNLSRHKQTHRALDSPHAKQ 166

Query: 453 CPN-DFIVINSKSWNNH 500
           CP+ D + ++  + + H
Sbjct: 167 CPHCDRVYVSMPALSMH 183


>AF169201-1|AAF01678.1|  270|Caenorhabditis elegans CES-1 protein.
          Length = 270

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 19/77 (24%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
 Frame = +3

Query: 276 IDMLRSIIRRFKSTNNLSKK-PSDHYVVLCPKCYFVTSSEVSVAEYIEMHKNFNTKFADR 452
           +D L+++ RR     +L+KK PS H   +C KC    ++  +++ + + H+  ++  A +
Sbjct: 112 LDSLQNLDRR-----SLNKKGPSSHNRCVCDKCGKSYATTSNLSRHKQTHRALDSPHAKQ 166

Query: 453 CPN-DFIVINSKSWNNH 500
           CP+ D + ++  + + H
Sbjct: 167 CPHCDRVYVSMPALSMH 183


>AC006748-6|AAF60516.1|  582|Caenorhabditis elegans Hypothetical
           protein Y39A3B.5a protein.
          Length = 582

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -1

Query: 557 FYKQQTLLIHRVK*GRTIFMIIPTFRINYNKIVRAPIGEFCVKIFMHF 414
           F +++ +  H  K    IF ++  F+INY K +++P+  F   +F  F
Sbjct: 484 FGRKKNMRHHFQKVYFDIFELLIFFKINYQKSIKSPVSVFSNYLFFGF 531


>AC006748-5|AAX55685.1|  471|Caenorhabditis elegans Hypothetical
           protein Y39A3B.5c protein.
          Length = 471

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -1

Query: 557 FYKQQTLLIHRVK*GRTIFMIIPTFRINYNKIVRAPIGEFCVKIFMHF 414
           F +++ +  H  K    IF ++  F+INY K +++P+  F   +F  F
Sbjct: 373 FGRKKNMRHHFQKVYFDIFELLIFFKINYQKSIKSPVSVFSNYLFFGF 420


>Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical
           protein C09H6.1b protein.
          Length = 1309

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 360 CPKCYFVTSSEVSVAEYIEMHKNFNTKFA-DRCPNDFIVINSKSWNNHEN 506
           C KC     S+ S+A + +MH     KFA + C  DF     KS  +H N
Sbjct: 114 CHKCPSRYESKSSLANHTKMHLGEKRKFACELC--DFSASTLKSLTHHNN 161


>Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical
           protein C09H6.1a protein.
          Length = 1311

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 360 CPKCYFVTSSEVSVAEYIEMHKNFNTKFA-DRCPNDFIVINSKSWNNHEN 506
           C KC     S+ S+A + +MH     KFA + C  DF     KS  +H N
Sbjct: 114 CHKCPSRYESKSSLANHTKMHLGEKRKFACELC--DFSASTLKSLTHHNN 161


>AC006607-5|AAF60371.2|  640|Caenorhabditis elegans Hypothetical
           protein C09E7.4 protein.
          Length = 640

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 297 IRRFKSTNNLSKKPSDHYVVLCPKCYFVTSSEVSVAEYIEMHKNFNTK 440
           +RR K T  LSK P+DHY           +  +S+ + IE  K+   K
Sbjct: 353 LRRKKDTYKLSKLPADHYTAPWSSVSQTCADILSMKKEIEKIKDPTVK 400


>AF063007-1|AAC16430.2|  730|Caenorhabditis elegans Hypothetical
           protein R119.1 protein.
          Length = 730

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/37 (29%), Positives = 24/37 (64%)
 Frame = +3

Query: 246 TINLTNW*KNIDMLRSIIRRFKSTNNLSKKPSDHYVV 356
           T+ L+NW + +   R +IR  +S++  S +PS ++++
Sbjct: 320 TLGLSNWVRKV---RDVIRSIQSSDTHSSRPSGNFLL 353


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,729,853
Number of Sequences: 27780
Number of extensions: 223254
Number of successful extensions: 611
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)