Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25e03
         (369 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    25   3.7  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    25   3.7  
SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces po...    25   4.9  
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce...    25   4.9  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    24   6.5  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    24   8.6  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    24   8.6  

>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 128 AKIRPEKAI*RPEYLTFALLAITCAEWIS 214
           AKI P K +  P+Y TF    +  AE+++
Sbjct: 200 AKILPPKYVNSPDYTTFPSSFVGTAEYVA 228


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 73   QTQPMSTRLTIPQCVFKSCKNKARKSNLTAGISYFRFASNH 195
            Q Q  S    I   + +SC +K R   LTA  +  R+ S+H
Sbjct: 1955 QFQSKSPECVIISTMNRSCDSKCRYFLLTAIANQLRYPSSH 1995


>SPBC646.05c |erg9||squalene synthase Erg9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +1

Query: 1   ECIKSVSSNNSALEM*ALILFSSLQTQPMSTRLTIPQ 111
           EC+  +++N       AL+  S L+TQ +     IPQ
Sbjct: 261 ECLSDMTANALTHATDALVYLSQLKTQEIFNFCAIPQ 297


>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 760

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 141 PKKQFNGRNILLSLC*QSRVQNGSRLSPE 227
           P  + N RN +L +  Q RVQ    + PE
Sbjct: 114 PTVEINYRNEVLDVIMQQRVQRNENIDPE 142


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 231 QEMTFISQLRSPLIDTGHLCLP 296
           Q +T ISQLRS L+ T  L  P
Sbjct: 216 QVLTMISQLRSRLLTTSRLLGP 237


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +1

Query: 70  LQTQPMSTRLTIPQCVFKS 126
           + T  +S +LT+P+CV +S
Sbjct: 92  IDTSHVSIKLTLPKCVLRS 110


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 294 PCSRLLKRGRNIVIKIP 344
           PC R LK+G   VI+ P
Sbjct: 132 PCGRCLKKGLECVIETP 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,469,157
Number of Sequences: 5004
Number of extensions: 27200
Number of successful extensions: 68
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)