Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25e03
         (369 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0222 + 13229330-13229501,13230175-13230275,13230381-132305...    28   2.0  
11_04_0334 - 16489768-16489796,16490588-16490936                       27   4.6  
04_04_0326 - 24407201-24407374,24407397-24407460,24408266-244086...    27   4.6  
04_04_1372 + 33008740-33009130,33009485-33011544                       26   8.1  

>06_02_0222 +
           13229330-13229501,13230175-13230275,13230381-13230574,
           13232600-13233068
          Length = 311

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -3

Query: 283 CPVSISGDLSWLIKVISCFSGDNRDPFCTRDC*QSE 176
           CP S SG  S      S  SGD  DP C + C  S+
Sbjct: 225 CPGSGSGSSSSFSSSSSSTSGDAEDPACAQRCATSD 260


>11_04_0334 - 16489768-16489796,16490588-16490936
          Length = 125

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -2

Query: 110 CGIVRRVDIGCV 75
           CG VRRVD+GC+
Sbjct: 70  CGAVRRVDVGCL 81


>04_04_0326 -
           24407201-24407374,24407397-24407460,24408266-24408689,
           24408885-24409057,24409178-24409275,24409723-24409853,
           24410053-24410174,24411091-24411245,24411976-24412081,
           24412328-24412419,24412499-24412620,24413444-24413544,
           24413636-24413849,24414173-24414311,24415228-24415584
          Length = 823

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -3

Query: 301 EHGRQRCPVSISGDLSWLIKVISCFSGDN 215
           +H  +R  +++   LSW++ V+ CF+G +
Sbjct: 171 DHVSKRALIALFLILSWVVVVVQCFTGSD 199


>04_04_1372 + 33008740-33009130,33009485-33011544
          Length = 816

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 64  SSLQTQPMSTRLTIPQCVFKSCKNKARKSNLTAGISYFRFASNHV 198
           SSL + P    L++ Q +F+        SN+T+ +  F F+ N++
Sbjct: 154 SSLFSLPRLEHLSLSQNLFEGSIPVTLSSNITSALKTFNFSMNNL 198


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,083,462
Number of Sequences: 37544
Number of extensions: 165192
Number of successful extensions: 351
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)