Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25e03
         (369 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical pr...    28   1.8  
AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical...    28   1.8  
Z29443-11|CAK55173.1|  367|Caenorhabditis elegans Hypothetical p...    27   5.5  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    26   7.3  
Z78415-1|CAB01671.1|  280|Caenorhabditis elegans Hypothetical pr...    26   9.7  
AF188751-1|AAF00548.1| 1083|Caenorhabditis elegans tyrosine kina...    26   9.7  
AF078787-11|AAC26948.2| 1083|Caenorhabditis elegans Vegf (vascul...    26   9.7  

>Z82069-7|CAB04907.2| 1792|Caenorhabditis elegans Hypothetical protein
            W04A8.7 protein.
          Length = 1792

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +3

Query: 147  KQFNGRNILLSLC*QSRVQ-NGSRLSPEKQEMTFISQLRSPLIDTGHL 287
            + +NG N +L+L  Q  +Q  G R+   +Q+   + +  +PL+DT  L
Sbjct: 1533 RMYNGDNNILTLTAQQMLQLAGKRMIEREQKFIGLEKQINPLLDTNDL 1580


>AL132902-15|CAC14425.1| 1792|Caenorhabditis elegans Hypothetical
            protein W04A8.7 protein.
          Length = 1792

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = +3

Query: 147  KQFNGRNILLSLC*QSRVQ-NGSRLSPEKQEMTFISQLRSPLIDTGHL 287
            + +NG N +L+L  Q  +Q  G R+   +Q+   + +  +PL+DT  L
Sbjct: 1533 RMYNGDNNILTLTAQQMLQLAGKRMIEREQKFIGLEKQINPLLDTNDL 1580


>Z29443-11|CAK55173.1|  367|Caenorhabditis elegans Hypothetical
           protein T07C4.11 protein.
          Length = 367

 Score = 26.6 bits (56), Expect = 5.5
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +2

Query: 191 ITCAEWISIVARETRDDFYKPAKISAY*HWTSLPSVLTATETW 319
           + C  W S  +     D Y+   I A   WT L S + ++ +W
Sbjct: 119 VNCEPWTSEKSENPFGDDYRFVYIGASGSWTKLHSDVVSSHSW 161


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 12/48 (25%), Positives = 22/48 (45%)
 Frame = +1

Query: 73  QTQPMSTRLTIPQCVFKSCKNKARKSNLTAGISYFRFASNHVCRMDLD 216
           Q QP   ++TIPQ     C+N+   +   +  S    + +  C++  D
Sbjct: 256 QIQPQQVQITIPQTCQSRCENRCLSTCTASQPSVCAPSCSTACQLSCD 303


>Z78415-1|CAB01671.1|  280|Caenorhabditis elegans Hypothetical
           protein C17G1.1 protein.
          Length = 280

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 12/52 (23%), Positives = 26/52 (50%)
 Frame = +1

Query: 55  ILFSSLQTQPMSTRLTIPQCVFKSCKNKARKSNLTAGISYFRFASNHVCRMD 210
           +L +S+    +   L + + V+K  +++  K +    +SY R    H+ RM+
Sbjct: 184 VLLASIAVIMIFVVLALLKIVYKEERSRKNKDDREPVVSYCRDIKEHIARME 235


>AF188751-1|AAF00548.1| 1083|Caenorhabditis elegans tyrosine kinase
           receptor T17A3.1 protein.
          Length = 1083

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 65  VHFKHSQCQPVSQYRSVYSKVAKIRPE 145
           +H K+ Q +   +YR ++ K  K R E
Sbjct: 315 IHIKNLQLRDAGKYRCIWKKTGKARQE 341


>AF078787-11|AAC26948.2| 1083|Caenorhabditis elegans Vegf (vascular
           endothelial growthfactor) receptor family protein 1
           protein.
          Length = 1083

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 65  VHFKHSQCQPVSQYRSVYSKVAKIRPE 145
           +H K+ Q +   +YR ++ K  K R E
Sbjct: 315 IHIKNLQLRDAGKYRCIWKKTGKARQE 341


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,158,162
Number of Sequences: 27780
Number of extensions: 152579
Number of successful extensions: 312
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)