Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25e03
         (369 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   0.50 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   2.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   3.5  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.2 bits (50), Expect = 0.50
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 10/56 (17%)
 Frame = +3

Query: 141 PKKQFNGRNILLSLC*QSRVQNGSR----------LSPEKQEMTFISQLRSPLIDT 278
           P+ Q N  NIL+ +C Q  +QN  R          L  EK+ ++ +    S LIDT
Sbjct: 317 PELQHN-LNILVDMCEQDIIQNDRRTRHLSDRVVALEAEKKNLSKVIDQHSQLIDT 371


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +2

Query: 164 EYLTFALLAITCAEWISI 217
           +YL F ++ +T + WI++
Sbjct: 314 KYLLFTMILVTLSIWITV 331


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = -3

Query: 364 FLNGFKRGIFITMFRPRFSSREH 296
           ++N F   +  T+F P F    H
Sbjct: 667 YMNSFVNPVIYTVFNPEFRKAFH 689



 Score = 20.6 bits (41), Expect = 6.1
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +1

Query: 55  ILFSSLQTQ--PMSTRLTIPQCVFKSCKNKARKS 150
           I++SSL +   P    + +   +FK+ +N+ARK+
Sbjct: 344 IIYSSLSSFYIPCIIMVFLYYNIFKALRNRARKA 377


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,267
Number of Sequences: 438
Number of extensions: 1761
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8804355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)