Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25d24
         (443 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8IEJ4 Cluster: Putative uncharacterized protein PF13_0...    36   0.52 
UniRef50_Q7NBP6 Cluster: HatC; n=2; Mycoplasma gallisepticum|Rep...    33   2.1  
UniRef50_Q80LI5 Cluster: Putative uncharacterized protein; n=1; ...    32   4.8  
UniRef50_Q9XMS7 Cluster: Haem lyase; n=2; Alveolata|Rep: Haem ly...    32   4.8  
UniRef50_Q0QJQ0 Cluster: Ribosomal protein S3; n=1; Verticillium...    32   4.8  
UniRef50_Q1FHJ3 Cluster: Putative uncharacterized protein; n=1; ...    32   6.4  
UniRef50_Q18RB5 Cluster: Putative uncharacterized protein precur...    32   6.4  

>UniRef50_Q8IEJ4 Cluster: Putative uncharacterized protein
           PF13_0072; n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PF13_0072 - Plasmodium
           falciparum (isolate 3D7)
          Length = 2361

 Score = 35.5 bits (78), Expect = 0.52
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
 Frame = -1

Query: 293 HYSRSD*XRNMNVFYKNYC---DNF**XNIXGQMRYENNIQLXRSKENFRIPIYXTN 132
           H  R    +N +V +KNYC   DN    NI   + + NN+ +  + +N ++  Y  N
Sbjct: 537 HIERKKYIKNKSVMFKNYCTDVDNDDDHNINDNINHNNNVNIYGNMKNIKMSTYRVN 593


>UniRef50_Q7NBP6 Cluster: HatC; n=2; Mycoplasma gallisepticum|Rep:
           HatC - Mycoplasma gallisepticum
          Length = 539

 Score = 33.5 bits (73), Expect = 2.1
 Identities = 31/124 (25%), Positives = 63/124 (50%), Gaps = 6/124 (4%)
 Frame = +3

Query: 6   KLLPXKXSFLNY--FLTSITYE-HNXYSXSVNFNVITNFDLRFKQIRSVNWNSKIFLTSS 176
           KLL  K  +L Y  F+  IT+  ++ +S  +  N +  F   F+++   N+N   F T++
Sbjct: 280 KLLTIK-KYLVYLIFILIITFSIYSIFSIRLRVNNLLIFTDFFQRL--FNFNKSFFATTT 336

Query: 177 QLNVVFISHLXXYIXSLKIITIVFIKDIHISXLITSRIVRIILFYLKYLYYCLR---LVI 347
                 +  +   + ++ I+ IVFI  +  + L ++ + R +  + K L+  +R   L+I
Sbjct: 337 FNENPLLMIILLTLQAILILGIVFIFSLLFATLCSNLLNRYVSLFFKALFLIIRTIPLII 396

Query: 348 LWRL 359
           ++RL
Sbjct: 397 VFRL 400


>UniRef50_Q80LI5 Cluster: Putative uncharacterized protein; n=1;
           Adoxophyes honmai NPV|Rep: Putative uncharacterized
           protein - Adoxophyes honmai nucleopolyhedrovirus
          Length = 241

 Score = 32.3 bits (70), Expect = 4.8
 Identities = 20/71 (28%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = +3

Query: 159 IFLTSSQLNVVFISHLXXYIXSLKIITIVFIKDIHISXLITSRI-VRIILFYLKYLYYCL 335
           + L S   N+V  + L   +    +I  +    I ++ L  + + V++I FY  +LY CL
Sbjct: 126 VVLLSVYYNIVLFN-LYNSVDEYDVIVSIINLLIVLTELFNNNVPVQLINFYQPFLYICL 184

Query: 336 RLVILWRLTTV 368
            L+ L+  +TV
Sbjct: 185 HLLFLYTYSTV 195


>UniRef50_Q9XMS7 Cluster: Haem lyase; n=2; Alveolata|Rep: Haem lyase
           - Tetrahymena pyriformis
          Length = 512

 Score = 32.3 bits (70), Expect = 4.8
 Identities = 22/103 (21%), Positives = 48/103 (46%)
 Frame = +3

Query: 21  KXSFLNYFLTSITYEHNXYSXSVNFNVITNFDLRFKQIRSVNWNSKIFLTSSQLNVVFIS 200
           K   +  FL  IT+    +  +  F+++ N       +  + W+ +I+ T+  + ++FIS
Sbjct: 328 KLYLIYMFLMLITWNLKHWKSNFWFSLLNNEFTIISNVYKIYWSIRIYKTTHLIILMFIS 387

Query: 201 HLXXYIXSLKIITIVFIKDIHISXLITSRIVRIILFYLKYLYY 329
           ++     S+ ++  +    I +S  I  +    ILF+ K L +
Sbjct: 388 YIFLNKLSINLVQQINNNYIVLSNTI-QQSTNNILFFNKQLIF 429


>UniRef50_Q0QJQ0 Cluster: Ribosomal protein S3; n=1; Verticillium
           dahliae|Rep: Ribosomal protein S3 - Verticillium dahliae
           (Verticillium wilt)
          Length = 474

 Score = 32.3 bits (70), Expect = 4.8
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +2

Query: 221 IIKNYHNSFYKRHSYF*XNHFSNSEDNFILSKVPILLSTTRHSLASYHSTVYSLGL 388
           IIK Y N F+K H +      S  +    L ++ +    T+H+ +    T+Y+L +
Sbjct: 68  IIKGYFNLFFKDHKFLDSRFISRKKQREFLRRIYVSNIETKHTNSKIIVTLYTLNI 123


>UniRef50_Q1FHJ3 Cluster: Putative uncharacterized protein; n=1;
           Clostridium phytofermentans ISDg|Rep: Putative
           uncharacterized protein - Clostridium phytofermentans
           ISDg
          Length = 694

 Score = 31.9 bits (69), Expect = 6.4
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +3

Query: 75  YSXSVNFNVITNFDLRFKQIRSVNWNSKIFLTSSQLNVVFISHLXXYIXSLK-IITIVFI 251
           Y+  + F+V   FD  + +   VN+N K+FL S  L+  +I  L     S K  +TI  +
Sbjct: 463 YNIEITFHVKNGFD--YTRTYDVNFNQKMFLASIDLSDEYIDQLIEQQYSYKNTVTITDV 520

Query: 252 KDIHI 266
            D  I
Sbjct: 521 FDFTI 525


>UniRef50_Q18RB5 Cluster: Putative uncharacterized protein
           precursor; n=2; Desulfitobacterium hafniense|Rep:
           Putative uncharacterized protein precursor -
           Desulfitobacterium hafniense (strain DCB-2)
          Length = 463

 Score = 31.9 bits (69), Expect = 6.4
 Identities = 26/97 (26%), Positives = 40/97 (41%)
 Frame = +3

Query: 36  NYFLTSITYEHNXYSXSVNFNVITNFDLRFKQIRSVNWNSKIFLTSSQLNVVFISHLXXY 215
           +YF T   Y H  Y  S  + +I    L F +IR  +W   I +  +   + F   L   
Sbjct: 63  SYFSTLYIYIHLAYFLSAGYYIIYYDTLFFSEIRKNSWYLMIHMGYNPARMFFSKLLALG 122

Query: 216 IXSLKIITIVFIKDIHISXLITSRIVRIILFYLKYLY 326
             +L + T+ F   I ++ L+       I  YL  LY
Sbjct: 123 YTALFVYTLGFAAIILLTALLK---FPFIFAYLPSLY 156


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 314,840,409
Number of Sequences: 1657284
Number of extensions: 5082002
Number of successful extensions: 11804
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11800
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 22761518346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)