Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25d24
         (443 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF541949-2|AAN34652.1|  826|Drosophila melanogaster pol protein ...    29   2.8  
AF420242-1|AAL16060.1|  826|Drosophila melanogaster RNA-directed...    29   2.8  
X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein ( Dros...    27   8.7  
AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependen...    27   8.7  

>AF541949-2|AAN34652.1|  826|Drosophila melanogaster pol protein
           protein.
          Length = 826

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 205 KCDMKTTFNXDEVRKILEFQFTERICLNRKSKFVI 101
           K ++      DEVRK++  + TE ICL ++   VI
Sbjct: 368 KPNVHEVITNDEVRKVVTLRITESICLLKRGNKVI 402


>AF420242-1|AAL16060.1|  826|Drosophila melanogaster RNA-directed
           DNA polymerase protein.
          Length = 826

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 205 KCDMKTTFNXDEVRKILEFQFTERICLNRKSKFVI 101
           K ++      DEVRK++  + TE ICL ++   VI
Sbjct: 368 KPNVHEVITNDEVRKVVTLRITESICLLKRGNKVI 402


>X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein (
           Drosophila retrotransposon412 genome. ).
          Length = 1237

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 175 DEVRKILEFQFTERICLNRKSKFVI 101
           DEVRK++  Q  + ICL +  K +I
Sbjct: 789 DEVRKVVTLQLNDSICLFKHGKKII 813


>AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependent
           DNA polymerase protein.
          Length = 1000

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 175 DEVRKILEFQFTERICLNRKSKFVI 101
           DEVRK++  Q  + ICL +  K +I
Sbjct: 552 DEVRKVVTLQLNDSICLFKHGKKII 576


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,830,320
Number of Sequences: 53049
Number of extensions: 213048
Number of successful extensions: 392
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1438687674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)