Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25d24
         (443 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83216-11|CAB05679.2|  404|Caenorhabditis elegans Hypothetical p...    29   2.0  
Z68295-1|CAA92587.1|  325|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z47073-4|CAM33507.1|  954|Caenorhabditis elegans Hypothetical pr...    28   2.7  
Z47073-3|CAA87374.1|  999|Caenorhabditis elegans Hypothetical pr...    28   2.7  
Z99169-1|CAB16306.2|  966|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U61946-2|AAC24387.1|  341|Caenorhabditis elegans Serpentine rece...    27   8.1  
AB055112-1|BAB62293.1|  966|Caenorhabditis elegans VHA-7 protein.      27   8.1  

>Z83216-11|CAB05679.2|  404|Caenorhabditis elegans Hypothetical
           protein C08F11.13 protein.
          Length = 404

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 20/84 (23%), Positives = 37/84 (44%)
 Frame = +3

Query: 93  FNVITNFDLRFKQIRSVNWNSKIFLTSSQLNVVFISHLXXYIXSLKIITIVFIKDIHISX 272
           F+ I  F    K + +  +  K +L    +N V  S +  Y+   K+  +VF  +     
Sbjct: 312 FSKIVYFHKSPKNVETRFFMKKWYLWFLLINCVIWSSIPLYVIG-KVGNVVFSPNSLFWA 370

Query: 273 LITSRIVRIILFYLKYLYYCLRLV 344
           L+T  +  I  F+ K +Y C + +
Sbjct: 371 LLTFCVFTIFSFFAKIVYCCYKKI 394


>Z68295-1|CAA92587.1|  325|Caenorhabditis elegans Hypothetical
           protein C07C7.1 protein.
          Length = 325

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 25/95 (26%), Positives = 48/95 (50%)
 Frame = +3

Query: 63  EHNXYSXSVNFNVITNFDLRFKQIRSVNWNSKIFLTSSQLNVVFISHLXXYIXSLKIITI 242
           +HN    +++F+   NF  R + I   N +  I   +  LNV FIS+   ++ S  + T 
Sbjct: 19  DHNEKRNNLDFDK-KNFKWRLRLIGIPNLHLHIPPATIFLNVSFISNFWIHLCSPFLPTQ 77

Query: 243 VFIKDIHISXLITSRIVRIILFYLKYLYYCLRLVI 347
              K ++    I + +V ++L +L+ + + L LV+
Sbjct: 78  KNNKILNSESKIFAFVVLLLLPHLRLIIFQLFLVL 112


>Z47073-4|CAM33507.1|  954|Caenorhabditis elegans Hypothetical
           protein ZC506.4b protein.
          Length = 954

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 22/88 (25%), Positives = 38/88 (43%)
 Frame = +3

Query: 111 FDLRFKQIRSVNWNSKIFLTSSQLNVVFISHLXXYIXSLKIITIVFIKDIHISXLITSRI 290
           FDL   Q++ + W S   L  + L V  I      I +L +I +  I +       + R 
Sbjct: 620 FDLSLSQLKYMRWRSMYSLVPTILAVFGI------IATLFVIVVYVIYNETPVVKASGRE 673

Query: 291 VRIILFYLKYLYYCLRLVILWRLTTVRC 374
           +  IL     + YC+  V+L + + + C
Sbjct: 674 LSYILLISMIMCYCMTFVLLSKPSAIVC 701


>Z47073-3|CAA87374.1|  999|Caenorhabditis elegans Hypothetical
           protein ZC506.4a protein.
          Length = 999

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 22/88 (25%), Positives = 38/88 (43%)
 Frame = +3

Query: 111 FDLRFKQIRSVNWNSKIFLTSSQLNVVFISHLXXYIXSLKIITIVFIKDIHISXLITSRI 290
           FDL   Q++ + W S   L  + L V  I      I +L +I +  I +       + R 
Sbjct: 665 FDLSLSQLKYMRWRSMYSLVPTILAVFGI------IATLFVIVVYVIYNETPVVKASGRE 718

Query: 291 VRIILFYLKYLYYCLRLVILWRLTTVRC 374
           +  IL     + YC+  V+L + + + C
Sbjct: 719 LSYILLISMIMCYCMTFVLLSKPSAIVC 746


>Z99169-1|CAB16306.2|  966|Caenorhabditis elegans Hypothetical
           protein C26H9A.1 protein.
          Length = 966

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 18/111 (16%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
 Frame = +3

Query: 33  LNYFLTSITYEHNXYSXSV----NFNVITNFDLRFKQIRSVNWNSKIFLTSSQLNVVFIS 200
           L++++     +H  YS  +    +F++   +      I ++  N   FL S ++    I 
Sbjct: 556 LDWWIARSYRKHREYSLELVPEKSFDIEKTYPFGVDPIWNIADNRLSFLNSMKMKASVII 615

Query: 201 HLXXYIXSLKIITIVFIKDIHISXLITSRIVRIILFYLKYLYYCLRLVILW 353
            +      + +  +  I       +I++ I ++I     ++Y C+++++ W
Sbjct: 616 GITQMTFGVFLSVLNHIHFKSYIDIISNFIPQVIFLSCIFIYLCIQIIVKW 666


>U61946-2|AAC24387.1|  341|Caenorhabditis elegans Serpentine
           receptor, class h protein220 protein.
          Length = 341

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 305 ILSKVPILLSTTRHSLASYHSTVYSLGLFLIMFXNVILV 421
           IL K P  +S+ + SL +  +T + L LFL +F  + L+
Sbjct: 44  ILFKTPKEMSSVKWSLFNLQTTSFLLDLFLSVFGTIQLL 82


>AB055112-1|BAB62293.1|  966|Caenorhabditis elegans VHA-7 protein.
          Length = 966

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 18/111 (16%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
 Frame = +3

Query: 33  LNYFLTSITYEHNXYSXSV----NFNVITNFDLRFKQIRSVNWNSKIFLTSSQLNVVFIS 200
           L++++     +H  YS  +    +F++   +      I ++  N   FL S ++    I 
Sbjct: 556 LDWWIARSYRKHREYSLELVPEKSFDIEKTYPFGVDPIWNIADNRLSFLNSMKMKASVII 615

Query: 201 HLXXYIXSLKIITIVFIKDIHISXLITSRIVRIILFYLKYLYYCLRLVILW 353
            +      + +  +  I       +I++ I ++I     ++Y C+++++ W
Sbjct: 616 GITQMTFGVFLSVLNHIHFKSYIDIISNFIPQVIFLSCIFIYLCIQIIVKW 666


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,710,895
Number of Sequences: 27780
Number of extensions: 130507
Number of successful extensions: 307
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)