Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25d21
         (593 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   5.2  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   6.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.1  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    21   9.1  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 533 SHLITIGYTNRMDTFV 486
           +HL  +GY  ++DT+V
Sbjct: 102 NHLKQLGYVQKLDTWV 117


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 300 SSDGDVTVTNDGATILKMMD 359
           SSD  VT++    T+ +MMD
Sbjct: 229 SSDSGVTMSTSRLTLSEMMD 248


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +1

Query: 1   DFDICDCKI 27
           DFD CDC++
Sbjct: 751 DFDACDCEM 759


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = -2

Query: 136 ATDPGNRAIFHDLNSAQTKDENRFNISVLRKYKTKLKFYN 17
           A  PG+ A+  ++ ++  +  +    S LR YKT +  ++
Sbjct: 20  AIQPGSNALSRNVEASGQRSVSSGFRSSLRNYKTLISSHD 59


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -2

Query: 163 INGRPYSSKATDPGNRAIFHDLNSAQTKDENRFNISVLR 47
           ++GR   S  T  GN+ I       QT  E  F+ + ++
Sbjct: 76  VDGRKVKSVCTLDGNKLIQVQKGEKQTTIEREFSSTEMK 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,778
Number of Sequences: 438
Number of extensions: 4153
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)