Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25d18
(722 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0730 - 6037375-6037509,6037892-6038019,6038339-6038423,603... 54 2e-07
12_01_0584 - 4762476-4762613,4763986-4764075,4765048-4765146,476... 52 6e-07
05_01_0120 - 828834-831143 33 0.23
02_04_0524 + 23671376-23671603,23672159-23672392 33 0.23
03_06_0205 - 32347636-32347646,32347762-32347801,32347959-323480... 32 0.40
04_03_0795 - 19704354-19704464,19705152-19705214,19705298-197053... 31 1.2
01_06_0195 + 27379266-27379300,27379870-27382174 30 1.6
04_04_0122 - 22918146-22918220,22918455-22918496,22918586-229186... 30 2.1
04_03_0446 - 16012926-16013042,16013266-16013469 29 3.7
03_01_0196 + 1559190-1560395 29 3.7
12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634... 28 6.5
08_02_1335 - 26226784-26227015,26227493-26228474,26229021-26230686 28 6.5
07_03_1424 - 26474464-26474514,26474549-26474635,26474905-264750... 28 6.5
01_06_0117 + 26605186-26605443,26605540-26605583,26605659-266057... 28 6.5
12_01_0393 - 3100230-3100714,3100973-3101097,3101271-3101399,310... 28 8.6
07_03_0439 + 18212584-18213065,18214164-18215010 28 8.6
>11_01_0730 -
6037375-6037509,6037892-6038019,6038339-6038423,
6038525-6038614,6040015-6040113,6040207-6040335,
6041341-6041463,6041549-6041711,6042331-6042380,
6042593-6042706,6042993-6043199,6043275-6043412,
6044708-6044770,6044845-6044928,6045014-6045094,
6045212-6045363,6045479-6045614,6045991-6046107
Length = 697
Score = 53.6 bits (123), Expect = 2e-07
Identities = 29/69 (42%), Positives = 41/69 (59%)
Frame = -2
Query: 718 VQEFIDTVEEFTEKCPGMLVGVHCTHGINRTGYMVCRYLMHTLGIAPQEAINRFEKARGH 539
V F+D ++ K P ++ VHCTHG NRTG+M+ YLM T EAIN F K R
Sbjct: 212 VMMFLDRQKQ--SKNPKYIL-VHCTHGHNRTGFMIIHYLMRTQVSCVAEAINIFAKRRPP 268
Query: 538 KIERQNYVQ 512
I +++Y++
Sbjct: 269 GIYKRDYIE 277
>12_01_0584 -
4762476-4762613,4763986-4764075,4765048-4765146,
4766032-4766154,4766243-4766405,4767307-4767356,
4767826-4767942,4769477-4769683,4769763-4769900,
4771212-4771274,4771358-4771441,4771933-4772084,
4772219-4772357,4772814-4772924
Length = 557
Score = 51.6 bits (118), Expect = 6e-07
Identities = 23/48 (47%), Positives = 31/48 (64%)
Frame = -2
Query: 655 VHCTHGINRTGYMVCRYLMHTLGIAPQEAINRFEKARGHKIERQNYVQ 512
VHCTHG NRTG+M+ YLM T + EA+N F + R I + +Y+Q
Sbjct: 202 VHCTHGHNRTGFMIVHYLMRTQLSSVTEALNIFAQRRPPGIYKNDYIQ 249
>05_01_0120 - 828834-831143
Length = 769
Score = 33.1 bits (72), Expect = 0.23
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = -2
Query: 721 IVQEFIDTVEEFTEKCPGMLVGVHCTHGINRTGYMVCRYLMHTLGIAPQEAINRFEKARG 542
I+ + D E+ E+ G V VHC G++R+ +V YLM G + +A + ARG
Sbjct: 208 ILYDVFDYFEDVREQ--GGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQLVKAARG 265
>02_04_0524 + 23671376-23671603,23672159-23672392
Length = 153
Score = 33.1 bits (72), Expect = 0.23
Identities = 17/52 (32%), Positives = 27/52 (51%)
Frame = -1
Query: 305 VLLAFHVRLLAGNSRKRSAVARHAQHRMFALVRGVLNRAIRQIYHFGN*IGD 150
+L+AF LL G + R A + A + + +G + I IY+FG+ I D
Sbjct: 9 ILVAFLALLLVGTCQARPAPGKAASSSLSSAAKGAVVDGITDIYNFGDSISD 60
>03_06_0205 -
32347636-32347646,32347762-32347801,32347959-32348060,
32348473-32348599,32348893-32350835,32351347-32351367
Length = 747
Score = 32.3 bits (70), Expect = 0.40
Identities = 28/100 (28%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
Frame = +3
Query: 45 MTDLNRMYT-GFQETMQRKDEMMHKKDELLQVKDTQVSNLIAKMIDLSDRAVQYPADKRK 221
M+ L RM+ QE + + +K L D + L K+ + R Q + K
Sbjct: 331 MSKLKRMHELDLQEKTEELFKFKREKGLLTLKNDVEFEPLRKKIPQIISRMDQIISKNIK 390
Query: 222 HPVLCVTRDGTTFTAITGQK---TYVESQKHKRNIDAANI 332
P LC+T DG I+ ++ Y E+Q H R + A N+
Sbjct: 391 MPSLCMTNDGLDERCISAKRIDSLYYENQ-HLRGLLADNM 429
>04_03_0795 -
19704354-19704464,19705152-19705214,19705298-19705378,
19705468-19705623,19705711-19705785,19706477-19706587,
19707206-19707304,19707453-19707546,19707779-19707838,
19709262-19709334,19711448-19711490,19711533-19711606,
19711985-19712075,19712170-19712214,19712533-19712589,
19713440-19713544,19713817-19713932,19714625-19714634,
19714810-19714920,19715502-19715594,19715664-19715690,
19715736-19715798,19716326-19716451,19716812-19716949,
19717164-19717832,19717949-19718123,19718269-19718450
Length = 1015
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/25 (60%), Positives = 19/25 (76%)
Frame = +3
Query: 159 LIAKMIDLSDRAVQYPADKRKHPVL 233
LIA+++ LSDRA AD+R HPVL
Sbjct: 33 LIAELLLLSDRAPSQFADRRFHPVL 57
>01_06_0195 + 27379266-27379300,27379870-27382174
Length = 779
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -3
Query: 219 CACPRGIEPRDPTNLSFWQLNWRP 148
C+CP G E RDPTN W RP
Sbjct: 293 CSCPPGYEMRDPTN---WSRGCRP 313
>04_04_0122 -
22918146-22918220,22918455-22918496,22918586-22918642,
22918784-22918844,22919219-22919280,22919372-22919485,
22919565-22919636,22919824-22919874,22919990-22920112,
22921261-22921383
Length = 259
Score = 29.9 bits (64), Expect = 2.1
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Frame = +3
Query: 120 DELLQVKDTQVSNLIAKMIDLS-DRAVQYPADKRKHPVLCVTRDGTTFTAITGQKTYVES 296
DE ++VK T + K +D++ DRA DKR + D + FT +K S
Sbjct: 145 DEAVKVKATSIR--WKKGMDIANDRAYTKKGDKR------ILIDESFFTWFNSEKN--RS 194
Query: 297 QKHKRNIDAANIVVENIRPNPTVDWNNA-TDRLQSKRSKRSISFDSLEE 440
H + A+++ E++ PNP +NN + L+ +S D EE
Sbjct: 195 FAHGAMDEVADVIKEDLWPNPLKYFNNEFEEELELLDDDDEVSDDDDEE 243
>04_03_0446 - 16012926-16013042,16013266-16013469
Length = 106
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +2
Query: 194 GSIPRGQAQTSGAVRDARRHYVYGYYRPKDVRGKPKAQT 310
G +PRG + G + + RR G +R + G P ++
Sbjct: 22 GGVPRGAEVSGGGLEEERRRQAKGSWRWRQAEGSPAGRS 60
>03_01_0196 + 1559190-1560395
Length = 401
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 218 QTSGAVRDARR-HYVYGYYRPKDVRGKPKAQT*HRRCQHCGGE 343
Q+ +++A R H + Y+ PK +RG P A T GG+
Sbjct: 80 QSLAGIKNALRLHAILDYFDPKKIRGLPDADTMTDTLYQAGGD 122
>12_02_0318 - 17457182-17462232,17462745-17462955,17463356-17463403,
17466161-17466346
Length = 1831
Score = 28.3 bits (60), Expect = 6.5
Identities = 22/89 (24%), Positives = 37/89 (41%)
Frame = +3
Query: 180 LSDRAVQYPADKRKHPVLCVTRDGTTFTAITGQKTYVESQKHKRNIDAANIVVENIRPNP 359
L+D A+ +PA+KR V C+T TA+ +Y R++ N++
Sbjct: 1687 LADPALDFPAEKRHEMVSCLTNVVVYETAMPLTVSYQVGLSSGRSL--------NVKSAR 1738
Query: 360 TVDWNNATDRLQSKRSKRSISFDSLEEAQ 446
W R+ R+ S S ++ E Q
Sbjct: 1739 IFRWEREESRIFMTRNFGSASLENAERVQ 1767
>08_02_1335 - 26226784-26227015,26227493-26228474,26229021-26230686
Length = 959
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 6/25 (24%)
Frame = +1
Query: 571 LPAAQYPGCALN------ICTPCNR 627
+PA Q+PGC +N +CT CN+
Sbjct: 236 IPACQHPGCKINGRTRIMVCTGCNK 260
>07_03_1424 -
26474464-26474514,26474549-26474635,26474905-26475006,
26475149-26475260,26475405-26475463,26475559-26475633,
26475734-26475832,26476128-26476343,26476426-26476500,
26476583-26476670,26476757-26476902,26477240-26477347,
26477417-26478436,26478437-26478715,26479471-26480520,
26480636-26480692,26480780-26480837,26481379-26481458,
26481598-26481654,26481764-26481833,26481967-26482202,
26482341-26482445,26482534-26482680,26482758-26482823,
26482916-26482979,26484040-26484200,26484308-26484400,
26484487-26484600,26484684-26484803,26484893-26484976,
26485061-26485216,26485389-26485811
Length = 1885
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/44 (25%), Positives = 28/44 (63%)
Frame = +3
Query: 30 QVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELLQVKDTQVSNL 161
+++ V + +MY + ++ R++E++H ++LLQ + T + +L
Sbjct: 797 EISLVKENAEKMYGHDEISVYRQNEILHSSEQLLQDELTHIKSL 840
>01_06_0117 +
26605186-26605443,26605540-26605583,26605659-26605737,
26605822-26605944,26606300-26606482,26606562-26606648,
26608149-26608255,26608387-26608474,26608805-26608885,
26608983-26609059,26609183-26609318,26609548-26609610,
26609983-26610563,26610816-26610933
Length = 674
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 216 RKHPVLCVTRDGTTFTAITGQKTYVESQKHKRNIDAANIVVENIRPNP-TVDWNN 377
R +P + V R G TA+ + Y+ Q +R + ++E + PNP T +W N
Sbjct: 392 RINPSVDVIRWGLGSTAVRMAEDYIYGQHQRRRLAYFVELMEVLNPNPRTENWLN 446
>12_01_0393 -
3100230-3100714,3100973-3101097,3101271-3101399,
3102480-3102508
Length = 255
Score = 27.9 bits (59), Expect = 8.6
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 248 RHYVYGYYRP-KDVRGKPKAQT*HRRC 325
+HY++G +RP KD+ G + Q H C
Sbjct: 99 KHYLWGLFRPRKDIVGVAEEQAAHAMC 125
>07_03_0439 + 18212584-18213065,18214164-18215010
Length = 442
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +3
Query: 114 KKDELLQVKDT---QVSNLIAKMIDLSDRAVQYPADKRKHPVLCVTRDG 251
K D+L++ D+ + S L KM++L R + P R+HP + R G
Sbjct: 393 KIDDLIKQYDSHSRRASELRLKMVNLQTRPISPPPRLRRHPSHLLPRKG 441
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,596,955
Number of Sequences: 37544
Number of extensions: 379053
Number of successful extensions: 1082
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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