Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25d18
(722 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z22178-4|CAA80156.1| 359|Caenorhabditis elegans Hypothetical pr... 83 1e-16
Z68319-5|CAA92703.1| 261|Caenorhabditis elegans Hypothetical pr... 82 5e-16
Z75525-7|CAH10769.1| 573|Caenorhabditis elegans Hypothetical pr... 65 6e-11
Z75525-6|CAA99765.2| 623|Caenorhabditis elegans Hypothetical pr... 65 6e-11
AF003925-1|AAB61344.1| 573|Caenorhabditis elegans mRNA capping ... 65 6e-11
AF125960-3|AAD14737.1| 446|Caenorhabditis elegans Hypothetical ... 40 0.001
AC026301-12|AAK68892.1| 227|Caenorhabditis elegans Hypothetical... 36 0.029
U41534-8|AAD31049.1| 221|Caenorhabditis elegans Hypothetical pr... 32 0.48
AJ131181-1|CAA10315.1| 962|Caenorhabditis elegans DAF-18 protei... 31 0.83
AF126286-1|AAD21620.1| 962|Caenorhabditis elegans PTEN phosphat... 31 0.83
AF098286-1|AAD03420.1| 962|Caenorhabditis elegans DAF-18 protein. 31 0.83
AF036706-19|AAK39284.1| 962|Caenorhabditis elegans Abnormal dau... 31 0.83
AC006607-6|AAF60370.2| 496|Caenorhabditis elegans Hypothetical ... 30 1.5
U23178-5|AAN63417.1| 439|Caenorhabditis elegans Vh1 dual-specif... 30 1.9
U23178-4|AAK68300.1| 606|Caenorhabditis elegans Vh1 dual-specif... 30 1.9
U23178-3|AAK68299.1| 657|Caenorhabditis elegans Vh1 dual-specif... 30 1.9
AY585194-1|AAS91377.1| 657|Caenorhabditis elegans VH1-like phos... 30 1.9
Z50176-1|CAA90538.2| 408|Caenorhabditis elegans Hypothetical pr... 29 2.5
U28739-7|AAB93458.1| 681|Caenorhabditis elegans Cell division c... 29 2.5
U28739-6|AAM54206.1| 695|Caenorhabditis elegans Cell division c... 29 2.5
U28739-5|AAT68903.1| 707|Caenorhabditis elegans Cell division c... 29 2.5
U28739-4|AAM54205.1| 693|Caenorhabditis elegans Cell division c... 29 2.5
U28739-3|AAB93459.1| 1063|Caenorhabditis elegans Cell division c... 29 2.5
AY661747-1|AAT74546.1| 707|Caenorhabditis elegans CDC-14 phosph... 29 2.5
AY661746-1|AAT74545.1| 695|Caenorhabditis elegans CDC-14 phosph... 29 2.5
AY661745-1|AAT74544.1| 681|Caenorhabditis elegans CDC-14 phosph... 29 2.5
AY661744-1|AAT74543.1| 1063|Caenorhabditis elegans CDC-14 phosph... 29 2.5
AY661743-1|AAT74542.1| 693|Caenorhabditis elegans CDC-14 phosph... 29 2.5
AF000363-1|AAB94407.1| 681|Caenorhabditis elegans protein phosp... 29 2.5
U41264-1|AAA82421.1| 929|Caenorhabditis elegans Hypothetical pr... 29 4.4
AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm (myotubu... 29 4.4
U41007-16|AAA82276.1| 288|Caenorhabditis elegans Hypothetical p... 28 7.8
AF039719-12|AAB96758.1| 293|Caenorhabditis elegans Hypothetical... 28 7.8
>Z22178-4|CAA80156.1| 359|Caenorhabditis elegans Hypothetical
protein F54C8.4 protein.
Length = 359
Score = 83.4 bits (197), Expect = 1e-16
Identities = 35/70 (50%), Positives = 52/70 (74%), Gaps = 2/70 (2%)
Frame = -2
Query: 718 VQEFIDTVEEFTEKC--PGMLVGVHCTHGINRTGYMVCRYLMHTLGIAPQEAINRFEKAR 545
V+ F ++++T+KC P L+GVHCT+GINR GY++CR+L+ LG + EAI+ FE+AR
Sbjct: 106 VESFHQVIQDYTDKCDDPDALIGVHCTNGINRCGYLICRFLIDRLGWSSHEAIDAFEQAR 165
Query: 544 GHKIERQNYV 515
G+ IE+ YV
Sbjct: 166 GYSIEKGAYV 175
>Z68319-5|CAA92703.1| 261|Caenorhabditis elegans Hypothetical
protein T23G7.5a protein.
Length = 261
Score = 81.8 bits (193), Expect = 5e-16
Identities = 34/70 (48%), Positives = 52/70 (74%), Gaps = 2/70 (2%)
Frame = -2
Query: 721 IVQEFIDTVEEFT--EKCPGMLVGVHCTHGINRTGYMVCRYLMHTLGIAPQEAINRFEKA 548
+VQ+FI+ V+EF ++ G L+GVHCTHG+NRTGY++CRY++ + +AI+ FE
Sbjct: 152 LVQDFINAVKEFVNDKENDGKLIGVHCTHGLNRTGYLICRYMIDVDNYSASDAISMFEYY 211
Query: 547 RGHKIERQNY 518
RGH +ER++Y
Sbjct: 212 RGHPMEREHY 221
>Z75525-7|CAH10769.1| 573|Caenorhabditis elegans Hypothetical
protein C03D6.3b protein.
Length = 573
Score = 64.9 bits (151), Expect = 6e-11
Identities = 29/67 (43%), Positives = 39/67 (58%)
Frame = -2
Query: 709 FIDTVEEFTEKCPGMLVGVHCTHGINRTGYMVCRYLMHTLGIAPQEAINRFEKARGHKIE 530
FI V+EF +K P +VGVHCTHG NRTG+++ YL AI F + R I
Sbjct: 104 FIKLVQEFHKKYPDRVVGVHCTHGFNRTGFLIAAYLFQVEEYGLDAAIGEFAENRQKGIY 163
Query: 529 RQNYVQD 509
+Q+Y+ D
Sbjct: 164 KQDYIDD 170
>Z75525-6|CAA99765.2| 623|Caenorhabditis elegans Hypothetical
protein C03D6.3a protein.
Length = 623
Score = 64.9 bits (151), Expect = 6e-11
Identities = 29/67 (43%), Positives = 39/67 (58%)
Frame = -2
Query: 709 FIDTVEEFTEKCPGMLVGVHCTHGINRTGYMVCRYLMHTLGIAPQEAINRFEKARGHKIE 530
FI V+EF +K P +VGVHCTHG NRTG+++ YL AI F + R I
Sbjct: 116 FIKLVQEFHKKYPDRVVGVHCTHGFNRTGFLIAAYLFQVEEYGLDAAIGEFAENRQKGIY 175
Query: 529 RQNYVQD 509
+Q+Y+ D
Sbjct: 176 KQDYIDD 182
>AF003925-1|AAB61344.1| 573|Caenorhabditis elegans mRNA capping
enzyme protein.
Length = 573
Score = 64.9 bits (151), Expect = 6e-11
Identities = 29/67 (43%), Positives = 39/67 (58%)
Frame = -2
Query: 709 FIDTVEEFTEKCPGMLVGVHCTHGINRTGYMVCRYLMHTLGIAPQEAINRFEKARGHKIE 530
FI V+EF +K P +VGVHCTHG NRTG+++ YL AI F + R I
Sbjct: 104 FIKLVQEFHKKYPDRVVGVHCTHGFNRTGFLIAAYLFQVEEYGLDAAIGEFAENRQKGIY 163
Query: 529 RQNYVQD 509
+Q+Y+ D
Sbjct: 164 KQDYIDD 170
>AF125960-3|AAD14737.1| 446|Caenorhabditis elegans Hypothetical
protein T12B3.1 protein.
Length = 446
Score = 40.3 bits (90), Expect = 0.001
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = -2
Query: 661 VGVHCTHGINRTGYMVCRYLMHTLGIAPQEAINRFEKARGHKIERQNYVQ 512
+ VHC G RTG ++ ++M+ LG++P +A++ R ++ + V+
Sbjct: 173 IAVHCHAGHGRTGMVIAAWMMYALGMSPSQAVDTVRSRRAKAVQSKEQVK 222
>AC026301-12|AAK68892.1| 227|Caenorhabditis elegans Hypothetical
protein Y54F10BM.13 protein.
Length = 227
Score = 35.9 bits (79), Expect = 0.029
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Frame = -2
Query: 712 EFIDTVEEFTEKCPGM--LVGVHCTHGINRTGYMVCRYLMHTLGIAPQEAINRFEKAR 545
++ + V EF +K +V +HC GI+R+ V YLM L I+ +EA+++ + R
Sbjct: 144 DYFERVFEFIDKVRQNEGIVFIHCNAGISRSATFVVAYLMKNLKISCREAMDKCRETR 201
>U41534-8|AAD31049.1| 221|Caenorhabditis elegans Hypothetical
protein C16A3.2 protein.
Length = 221
Score = 31.9 bits (69), Expect = 0.48
Identities = 16/53 (30%), Positives = 31/53 (58%)
Frame = -2
Query: 721 IVQEFIDTVEEFTEKCPGMLVGVHCTHGINRTGYMVCRYLMHTLGIAPQEAIN 563
I++E + + + K G+LV HC G++R+ +V YL+ L I ++A++
Sbjct: 110 IIEEAVRIIHDSRSKEEGVLV--HCFLGVSRSATLVAFYLISALSINWRDAVD 160
>AJ131181-1|CAA10315.1| 962|Caenorhabditis elegans DAF-18 protein
protein.
Length = 962
Score = 31.1 bits (67), Expect = 0.83
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -2
Query: 721 IVQEFIDTVEEFTEKCPGMLVGVHCTHGINRTGYMVCRYLMH 596
++ F +E+ E ++ VHC G RTG M+C L++
Sbjct: 145 LMAPFCREAKEWLEADDKHVIAVHCKAGKGRTGVMICALLIY 186
>AF126286-1|AAD21620.1| 962|Caenorhabditis elegans PTEN
phosphatidylinositol 3' phosphatasehomolog DAF-18
protein.
Length = 962
Score = 31.1 bits (67), Expect = 0.83
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -2
Query: 721 IVQEFIDTVEEFTEKCPGMLVGVHCTHGINRTGYMVCRYLMH 596
++ F +E+ E ++ VHC G RTG M+C L++
Sbjct: 145 LMAPFCREAKEWLEADDKHVIAVHCKAGKGRTGVMICALLIY 186
>AF098286-1|AAD03420.1| 962|Caenorhabditis elegans DAF-18 protein.
Length = 962
Score = 31.1 bits (67), Expect = 0.83
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -2
Query: 721 IVQEFIDTVEEFTEKCPGMLVGVHCTHGINRTGYMVCRYLMH 596
++ F +E+ E ++ VHC G RTG M+C L++
Sbjct: 145 LMAPFCREAKEWLEADDKHVIAVHCKAGKGRTGVMICALLIY 186
>AF036706-19|AAK39284.1| 962|Caenorhabditis elegans Abnormal dauer
formation protein 18 protein.
Length = 962
Score = 31.1 bits (67), Expect = 0.83
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -2
Query: 721 IVQEFIDTVEEFTEKCPGMLVGVHCTHGINRTGYMVCRYLMH 596
++ F +E+ E ++ VHC G RTG M+C L++
Sbjct: 145 LMAPFCREAKEWLEADDKHVIAVHCKAGKGRTGVMICALLIY 186
>AC006607-6|AAF60370.2| 496|Caenorhabditis elegans Hypothetical
protein C09E7.5 protein.
Length = 496
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = +3
Query: 3 DKQIEAKDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDE----LLQVKDTQVSNLIAK 170
DK+ + T T +N M + +ET++ + E K+DE L K+ ++ +L +
Sbjct: 89 DKEDTKSCSECTEFKTYMNNMKSVLEETLEEEKEKNKKRDEASKKTLNSKNEEIEHLKKR 148
Query: 171 MIDLSDRAVQYPADKRK 221
+I LS+ + K K
Sbjct: 149 VISLSNSQSENETMKSK 165
>U23178-5|AAN63417.1| 439|Caenorhabditis elegans Vh1
dual-specificity phosphatasefamily protein 1, isoform c
protein.
Length = 439
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -2
Query: 691 EFTEKC--PGMLVGVHCTHGINRTGYMVCRYLMHTLGIAPQEAINRFEKAR 545
EF EKC G +HC GI+R+ + Y+M + + +A R+ K R
Sbjct: 91 EFLEKCRRAGKKCLIHCLAGISRSPTLAISYIMRYMKMGSDDAY-RYVKER 140
>U23178-4|AAK68300.1| 606|Caenorhabditis elegans Vh1
dual-specificity phosphatasefamily protein 1, isoform b
protein.
Length = 606
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -2
Query: 691 EFTEKC--PGMLVGVHCTHGINRTGYMVCRYLMHTLGIAPQEAINRFEKAR 545
EF EKC G +HC GI+R+ + Y+M + + +A R+ K R
Sbjct: 195 EFLEKCRRAGKKCLIHCLAGISRSPTLAISYIMRYMKMGSDDAY-RYVKER 244
>U23178-3|AAK68299.1| 657|Caenorhabditis elegans Vh1
dual-specificity phosphatasefamily protein 1, isoform a
protein.
Length = 657
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -2
Query: 691 EFTEKC--PGMLVGVHCTHGINRTGYMVCRYLMHTLGIAPQEAINRFEKAR 545
EF EKC G +HC GI+R+ + Y+M + + +A R+ K R
Sbjct: 246 EFLEKCRRAGKKCLIHCLAGISRSPTLAISYIMRYMKMGSDDAY-RYVKER 295
>AY585194-1|AAS91377.1| 657|Caenorhabditis elegans VH1-like
phosphatase 1 protein.
Length = 657
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -2
Query: 691 EFTEKC--PGMLVGVHCTHGINRTGYMVCRYLMHTLGIAPQEAINRFEKAR 545
EF EKC G +HC GI+R+ + Y+M + + +A R+ K R
Sbjct: 246 EFLEKCRRAGKKCLIHCLAGISRSPTLAISYIMRYMKMGSDDAY-RYVKER 295
>Z50176-1|CAA90538.2| 408|Caenorhabditis elegans Hypothetical
protein C09G1.1 protein.
Length = 408
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = -1
Query: 125 LVFFVHHFIFSLHSFLK 75
L FFVHH +F+L S+LK
Sbjct: 20 LFFFVHHLLFNLFSYLK 36
>U28739-7|AAB93458.1| 681|Caenorhabditis elegans Cell division
cycle related protein14, isoform c protein.
Length = 681
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 661 VGVHCTHGINRTGYMVCRYLMHTLGIAPQEAI 566
V VHC G+ RTG ++ ++M G+ E +
Sbjct: 291 VAVHCKAGLGRTGTLIACWMMKEYGLTAGECM 322
>U28739-6|AAM54206.1| 695|Caenorhabditis elegans Cell division
cycle related protein14, isoform d protein.
Length = 695
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 661 VGVHCTHGINRTGYMVCRYLMHTLGIAPQEAI 566
V VHC G+ RTG ++ ++M G+ E +
Sbjct: 291 VAVHCKAGLGRTGTLIACWMMKEYGLTAGECM 322
>U28739-5|AAT68903.1| 707|Caenorhabditis elegans Cell division
cycle related protein14, isoform e protein.
Length = 707
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 661 VGVHCTHGINRTGYMVCRYLMHTLGIAPQEAI 566
V VHC G+ RTG ++ ++M G+ E +
Sbjct: 291 VAVHCKAGLGRTGTLIACWMMKEYGLTAGECM 322
>U28739-4|AAM54205.1| 693|Caenorhabditis elegans Cell division
cycle related protein14, isoform a protein.
Length = 693
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 661 VGVHCTHGINRTGYMVCRYLMHTLGIAPQEAI 566
V VHC G+ RTG ++ ++M G+ E +
Sbjct: 291 VAVHCKAGLGRTGTLIACWMMKEYGLTAGECM 322
>U28739-3|AAB93459.1| 1063|Caenorhabditis elegans Cell division
cycle related protein14, isoform b protein.
Length = 1063
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 661 VGVHCTHGINRTGYMVCRYLMHTLGIAPQEAI 566
V VHC G+ RTG ++ ++M G+ E +
Sbjct: 291 VAVHCKAGLGRTGTLIACWMMKEYGLTAGECM 322
>AY661747-1|AAT74546.1| 707|Caenorhabditis elegans CDC-14
phosphatase isoform E protein.
Length = 707
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 661 VGVHCTHGINRTGYMVCRYLMHTLGIAPQEAI 566
V VHC G+ RTG ++ ++M G+ E +
Sbjct: 291 VAVHCKAGLGRTGTLIACWMMKEYGLTAGECM 322
>AY661746-1|AAT74545.1| 695|Caenorhabditis elegans CDC-14
phosphatase isoform D protein.
Length = 695
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 661 VGVHCTHGINRTGYMVCRYLMHTLGIAPQEAI 566
V VHC G+ RTG ++ ++M G+ E +
Sbjct: 291 VAVHCKAGLGRTGTLIACWMMKEYGLTAGECM 322
>AY661745-1|AAT74544.1| 681|Caenorhabditis elegans CDC-14
phosphatase isoform C protein.
Length = 681
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 661 VGVHCTHGINRTGYMVCRYLMHTLGIAPQEAI 566
V VHC G+ RTG ++ ++M G+ E +
Sbjct: 291 VAVHCKAGLGRTGTLIACWMMKEYGLTAGECM 322
>AY661744-1|AAT74543.1| 1063|Caenorhabditis elegans CDC-14
phosphatase isoform B protein.
Length = 1063
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 661 VGVHCTHGINRTGYMVCRYLMHTLGIAPQEAI 566
V VHC G+ RTG ++ ++M G+ E +
Sbjct: 291 VAVHCKAGLGRTGTLIACWMMKEYGLTAGECM 322
>AY661743-1|AAT74542.1| 693|Caenorhabditis elegans CDC-14
phosphatase isoform A protein.
Length = 693
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 661 VGVHCTHGINRTGYMVCRYLMHTLGIAPQEAI 566
V VHC G+ RTG ++ ++M G+ E +
Sbjct: 291 VAVHCKAGLGRTGTLIACWMMKEYGLTAGECM 322
>AF000363-1|AAB94407.1| 681|Caenorhabditis elegans protein
phosphatase CDC14 protein.
Length = 681
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 661 VGVHCTHGINRTGYMVCRYLMHTLGIAPQEAI 566
V VHC G+ RTG ++ ++M G+ E +
Sbjct: 291 VAVHCKAGLGRTGTLIACWMMKEYGLTAGECM 322
>U41264-1|AAA82421.1| 929|Caenorhabditis elegans Hypothetical
protein F10E7.8 protein.
Length = 929
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 264 AITGQKTYVESQKHKRNIDAANIVVENIRPNPTVDWNNATD 386
AI Q Y+ Q K N+D + + +R T DW A+D
Sbjct: 779 AIKMQSRYLGRQWRKSNMDIISAIYSRVRHRMTDDWAFASD 819
>AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm
(myotubularin) family protein 5 protein.
Length = 1744
Score = 28.7 bits (61), Expect = 4.4
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Frame = +3
Query: 21 KDLQVTRVMTDLNRMYTGFQETMQRKDEMMHKKDELL----QVKDTQVS-NLIAKMIDLS 185
K + R + L TG Q+T+ K + + ++K +V N IAK+ + S
Sbjct: 1090 KVVNYRRNASKLTGSMTGSQQTLHSKASSNEESSSNIVAGAEIKSAEVQMNYIAKLSNSS 1149
Query: 186 DRAVQYPADKRKHPVLCVTRDGTTFT 263
RAV Y + DG T T
Sbjct: 1150 QRAVSYALPTQYADKFSTFNDGCTLT 1175
>U41007-16|AAA82276.1| 288|Caenorhabditis elegans Hypothetical
protein C33H5.16 protein.
Length = 288
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 673 PGMLVGVHCTHGINRTGYMV 614
PG + VHC+ GI RTG +V
Sbjct: 193 PGGPIAVHCSAGIGRTGSVV 212
>AF039719-12|AAB96758.1| 293|Caenorhabditis elegans Hypothetical
protein K04F10.7 protein.
Length = 293
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +3
Query: 78 QETMQRKDEMMHKKDELLQVKDTQVSNLIAKMIDLSDR 191
++ ++R ++ +KD+L+ KD Q+SNL A +L +
Sbjct: 225 EDEIRRLKTLLAEKDQLIFDKDKQISNLKADQYNLDKK 262
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,034,953
Number of Sequences: 27780
Number of extensions: 342854
Number of successful extensions: 1251
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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