Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25d14
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    28   1.1  
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    26   4.5  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   6.0  

>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = +1

Query: 439 IESACHDIQYPAIAKICKDNTAHFENYIHHVLKSNTSAETMCKIVGMCNNMKLDN 603
           I++AC   Q+  + +IC+DN  +    + ++LK    A+ +  ++ +C+     N
Sbjct: 729 IQAACLMNQFTEVERICRDNNVYNPEKVKNLLKEAKLADQL-PLILVCDRYDFVN 782


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 696 IRRTPSTTGFSKELIFMLDGHVGAFLVQRNNIVQFHVVTHAD 571
           + + PS +   KELI     ++GAFL++  N     V+T+ D
Sbjct: 181 VTKNPSVSEAIKELIKKRQPYIGAFLLKDEN-TDTDVITNID 221


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -3

Query: 340  PAFVSPTQSPYSVQPRRIQPP 278
            P    P QSP  VQP   QPP
Sbjct: 1031 PMAADPFQSPLYVQPTGFQPP 1051


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,041,903
Number of Sequences: 5004
Number of extensions: 65142
Number of successful extensions: 195
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)