Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25d13
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb...    30   0.24 
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||...    25   6.7  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   6.7  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    25   6.7  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    25   8.9  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.9  
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy...    25   8.9  

>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
 Frame = +1

Query: 226 NTPATPPNF-PDALAAFSRLSTTGSPNNAGGVCMNTAPPVS 345
           ++P  PP+F  DA+++FS L T  S NN GG   +TAP V+
Sbjct: 428 DSPRVPPSFSDDAVSSFS-LVTAPSINNVGG---STAPSVN 464


>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 454

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -2

Query: 253 ESLVV*LECCMVSLIAVRSEVQQCHWHQRVLPCLGKI*IRQSQIASEP 110
           E L +  E C VS++     ++     Q    CLGKI ++ +++  EP
Sbjct: 312 EGLQMAKELCGVSVLRSGGTLETALCRQFPTVCLGKILVQINKVTQEP 359


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -1

Query: 353 ASGDTGGAVFIQTPPALLGLPVVDSRENAANASGKFG 243
           ++G  GG+ F Q  PA  G     +  N    +G FG
Sbjct: 319 STGLFGGSTFNQQKPAFSGFGSTTNTTNTGTGTGLFG 355


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 247 NFPDALAAFSRLSTTGSPNNAGGVCMNTAPPVSPLAT 357
           N   A   F  L +TGS N+ G    NTA   +  AT
Sbjct: 97  NTAGAKPLFGGLGSTGSANSTGDKSKNTASSATGAAT 133


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +1

Query: 196 HYGQQLMTPCNTPATPPNFPDALAAFSRLSTTGSPNNAGGVCMNTAPPVS 345
           H   Q  +   TP+T  +    +++   +ST+ S +NA      T+P  S
Sbjct: 143 HRSSQFQSTTLTPSTTDSSSTDVSSSDSVSTSASSSNASNTVSVTSPASS 192


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 15/78 (19%), Positives = 34/78 (43%)
 Frame = +1

Query: 229 TPATPPNFPDALAAFSRLSTTGSPNNAGGVCMNTAPPVSPLATHXXXXSHQSHVQINMYP 408
           TP  PP    + +     ++T S   +    ++T+   +   +     +  + V   + P
Sbjct: 356 TPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPP 415

Query: 409 GSANTPTNYTSISCSTAM 462
            S++TP   T+ + ST++
Sbjct: 416 TSSSTPLTTTNCTTSTSV 433


>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 764

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 363 SASISPISCTNQHVSGLCKHTNKLHIYLLLNCNVQ 467
           S  + P+S   + +  + KH  K H++L  +C ++
Sbjct: 704 SPRVPPVSEFKERIDAIVKHVPKDHLWLNPDCGLK 738


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,517,431
Number of Sequences: 5004
Number of extensions: 50383
Number of successful extensions: 105
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)