Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25d13
         (623 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0167 + 14382976-14385244,14389373-14389842                       29   4.0  
09_04_0574 + 18645363-18645870,18645995-18646491,18646631-186466...    29   4.0  
05_07_0108 + 27735783-27736205                                         28   5.2  
12_02_0161 + 14659338-14659467,14659553-14659888,14660034-146602...    28   6.9  
11_04_0195 - 14725553-14725571,14725988-14726079,14727214-147273...    28   6.9  
09_02_0193 - 5626819-5627078,5627177-5627561                           28   6.9  
01_06_0706 + 31352513-31352813,31352906-31353363                       27   9.2  

>11_04_0167 + 14382976-14385244,14389373-14389842
          Length = 912

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 211 LMTPCNTPATPPNFPDALAAFSRLSTTGSPNNAG-GVCMNTAPPVSPLAT 357
           LM+  N   +  NF     AF+ +   G   ++G G C+NT  P SPL T
Sbjct: 281 LMSLKNVSLSNNNFQGPKPAFAAIP--GQDEDSGNGFCLNTPGPCSPLTT 328


>09_04_0574 +
           18645363-18645870,18645995-18646491,18646631-18646696,
           18646921-18646989,18647401-18647466
          Length = 401

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 17/62 (27%), Positives = 24/62 (38%)
 Frame = +1

Query: 208 QLMTPCNTPATPPNFPDALAAFSRLSTTGSPNNAGGVCMNTAPPVSPLATHXXXXSHQSH 387
           QL      P +P +  D + A       G  N       + APP   +A+H     +QSH
Sbjct: 59  QLQLQQQRPGSPDHAADTVLARFLAGHGGHDNKPPRPAAHFAPPEDSMASHQQQLMYQSH 118

Query: 388 VQ 393
            Q
Sbjct: 119 QQ 120


>05_07_0108 + 27735783-27736205
          Length = 140

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 259 ALAAFSRLSTTGSPNNAGGVCMN 327
           A  A +  +TTG PN+AGG C++
Sbjct: 4   ASKAVAMTATTGRPNDAGGACVD 26


>12_02_0161 +
           14659338-14659467,14659553-14659888,14660034-14660266,
           14660344-14660805,14660887-14661719,14661802-14661972,
           14662052-14662352
          Length = 821

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +3

Query: 279 AVHNRES*QCRWSLYEYRSTCVSTRY-ASSASISPISCTNQHVSGLCK 419
           AVH     Q   SL +YRS+C ST   A    ++P++  + H+ G+ +
Sbjct: 345 AVHPTPRAQHDASLSQYRSSCASTEVPAPGLPVAPLAAVD-HIEGVAQ 391


>11_04_0195 -
           14725553-14725571,14725988-14726079,14727214-14727335,
           14727588-14727597,14727798-14727896,14728046-14728612
          Length = 302

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
 Frame = +1

Query: 232 PATPPNFPDALAAFSRLSTTGSPNNAGGVCMNTAPPVSPLATH-------XXXXSHQSHV 390
           P  PP    A +     ++T + + AG VC +  P  SP+++            +H S +
Sbjct: 107 PEPPPEPTSAPSPLPEPNSTSASDGAGVVCPSARPTASPISSSISARRIPSLLCNHDSGL 166

Query: 391 QINMY---PGSANTPTNYTSISCSTAM 462
             ++Y   P   +TP +  S+  S +M
Sbjct: 167 ASSVYHAPPPPRSTPMDLLSVMQSQSM 193


>09_02_0193 - 5626819-5627078,5627177-5627561
          Length = 214

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +3

Query: 96  TIVTSGSLAI*DCLIYIFPRHGNT--RWCQWHCCTSLRTAIN 215
           TI+T  + A+   +  ++P H  T  RWC+WH     +T I+
Sbjct: 125 TILTDQAPAMAAAIRKVYP-HPQTVHRWCKWHVLKDTQTGID 165


>01_06_0706 + 31352513-31352813,31352906-31353363
          Length = 252

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 344 LHSLRILRLHL-TNLMYKSTCIRALQTHQQITHLSLAQLQCAVNICQDKCSILV 502
           L  ++ ++ H+ T  +Y     R ++TH  ++ L+   LQCAV    DK + L+
Sbjct: 47  LRPVKHIKQHVCTFALYAHDPRRQVETHHFVSRLNQDVLQCAVYDADDKHARLI 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,587,629
Number of Sequences: 37544
Number of extensions: 342453
Number of successful extensions: 850
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)