Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25d13
         (623 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36237-1|CAA85271.2|  619|Caenorhabditis elegans Hypothetical pr...    32   0.38 
U13076-1|AAA96984.1|  463|Caenorhabditis elegans steroid hormone...    32   0.38 
AY204167-1|AAO39171.1|  619|Caenorhabditis elegans nuclear recep...    32   0.38 
AF273770-1|AAG15119.1|  469|Caenorhabditis elegans nuclear recep...    32   0.38 
AF083224-1|AAD03682.1|  619|Caenorhabditis elegans nuclear recep...    32   0.38 
U97405-1|AAB53007.1|  327|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AC025726-4|AAK73922.1|  198|Caenorhabditis elegans Prion-like-(q...    28   6.2  

>Z36237-1|CAA85271.2|  619|Caenorhabditis elegans Hypothetical
           protein C48D5.1 protein.
          Length = 619

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 25/89 (28%), Positives = 41/89 (46%)
 Frame = +1

Query: 211 LMTPCNTPATPPNFPDALAAFSRLSTTGSPNNAGGVCMNTAPPVSPLATHXXXXSHQSHV 390
           LM    +P  P +FP + +      TT S NN GG     +P  S L T       Q  +
Sbjct: 185 LMPSFTSPFYPQHFPVSDSRRGSQGTTSSSNNTGG---TPSPHSSSLPTSPPQL--QGFL 239

Query: 391 QINMYPGSANTPTNYTSISCSTAMCSEHM 477
           +  + P + +TPT++  +   TA+ ++ M
Sbjct: 240 RSFLNPDNLSTPTSF-GVPSETALDADKM 267


>U13076-1|AAA96984.1|  463|Caenorhabditis elegans steroid hormone
           receptor familymember CNR8 protein.
          Length = 463

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 25/89 (28%), Positives = 41/89 (46%)
 Frame = +1

Query: 211 LMTPCNTPATPPNFPDALAAFSRLSTTGSPNNAGGVCMNTAPPVSPLATHXXXXSHQSHV 390
           LM    +P  P +FP + +      TT S NN GG     +P  S L T       Q  +
Sbjct: 29  LMPTFTSPFYPQHFPVSDSRRGSQGTTSSSNNTGG---TPSPHSSSLPTSPPQL--QGFL 83

Query: 391 QINMYPGSANTPTNYTSISCSTAMCSEHM 477
           +  + P + +TPT++  +   TA+ ++ M
Sbjct: 84  RSFLNPDNLSTPTSF-GVPSETALDADKM 111


>AY204167-1|AAO39171.1|  619|Caenorhabditis elegans nuclear receptor
           NHR-6 protein.
          Length = 619

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 25/89 (28%), Positives = 41/89 (46%)
 Frame = +1

Query: 211 LMTPCNTPATPPNFPDALAAFSRLSTTGSPNNAGGVCMNTAPPVSPLATHXXXXSHQSHV 390
           LM    +P  P +FP + +      TT S NN GG     +P  S L T       Q  +
Sbjct: 185 LMPSFTSPFYPQHFPVSDSRRGSQGTTSSSNNTGG---TPSPHSSSLPTSPPQL--QGFL 239

Query: 391 QINMYPGSANTPTNYTSISCSTAMCSEHM 477
           +  + P + +TPT++  +   TA+ ++ M
Sbjct: 240 RSFLNPDNLSTPTSF-GVPSETALDADKM 267


>AF273770-1|AAG15119.1|  469|Caenorhabditis elegans nuclear receptor
           NHR-6 protein.
          Length = 469

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 25/89 (28%), Positives = 41/89 (46%)
 Frame = +1

Query: 211 LMTPCNTPATPPNFPDALAAFSRLSTTGSPNNAGGVCMNTAPPVSPLATHXXXXSHQSHV 390
           LM    +P  P +FP + +      TT S NN GG     +P  S L T       Q  +
Sbjct: 35  LMPSFTSPFYPQHFPVSDSRRGSQGTTSSSNNTGG---TPSPHSSSLPTSPPQL--QGFL 89

Query: 391 QINMYPGSANTPTNYTSISCSTAMCSEHM 477
           +  + P + +TPT++  +   TA+ ++ M
Sbjct: 90  RSFLNPDNLSTPTSF-GVPSETALDADKM 117


>AF083224-1|AAD03682.1|  619|Caenorhabditis elegans nuclear receptor
           NHR-6 protein.
          Length = 619

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 25/89 (28%), Positives = 41/89 (46%)
 Frame = +1

Query: 211 LMTPCNTPATPPNFPDALAAFSRLSTTGSPNNAGGVCMNTAPPVSPLATHXXXXSHQSHV 390
           LM    +P  P +FP + +      TT S NN GG     +P  S L T       Q  +
Sbjct: 185 LMPSFTSPFYPQHFPVSDSRRGSQGTTSSSNNTGG---TPSPHSSSLPTSPPQL--QGFL 239

Query: 391 QINMYPGSANTPTNYTSISCSTAMCSEHM 477
           +  + P + +TPT++  +   TA+ ++ M
Sbjct: 240 RSFLNPDNLSTPTSF-GVPSETALDADKM 267


>U97405-1|AAB53007.1|  327|Caenorhabditis elegans Hypothetical
           protein T09B4.5a protein.
          Length = 327

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 217 TPCNTPATPPNFPDALAAFSRLSTTGSPNNAGGVCMNT 330
           T   TP TP   P + +A SR  + G P NA  +  +T
Sbjct: 70  TASKTPKTPSKTPSSASARSRSRSRGRPTNASRLSAST 107


>AC025726-4|AAK73922.1|  198|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 88
           protein.
          Length = 198

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 208 QLMTPCNTPATPPNFPD 258
           Q + P  TP  PPNFPD
Sbjct: 18  QRVPPSTTPVPPPNFPD 34


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,298,566
Number of Sequences: 27780
Number of extensions: 304971
Number of successful extensions: 747
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)