Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25d09
         (591 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7RTF4 Cluster: Putative uncharacterized protein PY0004...    36   0.71 
UniRef50_Q3LW38 Cluster: Putative uncharacterized protein; n=1; ...    35   1.6  
UniRef50_Q8IK96 Cluster: Putative uncharacterized protein; n=1; ...    35   1.6  
UniRef50_Q25803 Cluster: Rps2 protein; n=2; Plasmodium|Rep: Rps2...    34   2.2  
UniRef50_A3DI41 Cluster: ATPase; n=2; Clostridium|Rep: ATPase - ...    33   6.6  
UniRef50_Q54M80 Cluster: Putative uncharacterized protein; n=1; ...    32   8.7  

>UniRef50_Q7RTF4 Cluster: Putative uncharacterized protein PY00040;
            n=9; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
            protein PY00040 - Plasmodium yoelii yoelii
          Length = 5229

 Score = 35.9 bits (79), Expect = 0.71
 Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
 Frame = -1

Query: 486  VSVSVYIILYIGFRN--TRTLCK*HYLETYVHLKNINKQLQLKIITVFRTLLYYNINIYT 313
            ++ + Y+I Y+   N  T+ L   +  +TY++ KN N  L +KII  +R+  YY +  + 
Sbjct: 4223 INTTKYMIAYLTHVNRYTKKLHLNNNYDTYLNKKNKNSDLSVKIIYPYRS-TYYTLR-HN 4280

Query: 312  RKVNSLQYGTKIIGRQ 265
             ++ S +   K++G Q
Sbjct: 4281 NEIESSKIALKVVGVQ 4296


>UniRef50_Q3LW38 Cluster: Putative uncharacterized protein; n=1;
           Bigelowiella natans|Rep: Putative uncharacterized
           protein - Bigelowiella natans (Pedinomonas minutissima)
           (Chlorarachnion sp.(strain CCMP 621))
          Length = 873

 Score = 34.7 bits (76), Expect = 1.6
 Identities = 18/56 (32%), Positives = 32/56 (57%)
 Frame = -1

Query: 468 IILYIGFRNTRTLCK*HYLETYVHLKNINKQLQLKIITVFRTLLYYNINIYTRKVN 301
           ++ Y+  R  R+L    YL  ++++ + N  ++L  IT  R  L Y +N+Y RK+N
Sbjct: 794 VLFYVSKRKNRSL---RYLLAFINISS-NSNVKLSNITNSRKKLLYLLNVYFRKIN 845


>UniRef50_Q8IK96 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 4638

 Score = 34.7 bits (76), Expect = 1.6
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = -1

Query: 414 LETYVHLKNINKQLQLKIIT--VFRTLLYYNINIYTRKVNSLQYGTKI 277
           +  Y++ KNIN  L  K I   ++   +YY IN +T K+N L Y T++
Sbjct: 377 INIYLYNKNINTYLYNKNINTYLYNKNIYYKINNFTHKINILCYHTQM 424


>UniRef50_Q25803 Cluster: Rps2 protein; n=2; Plasmodium|Rep: Rps2
           protein - Plasmodium falciparum
          Length = 227

 Score = 34.3 bits (75), Expect = 2.2
 Identities = 25/79 (31%), Positives = 38/79 (48%)
 Frame = -1

Query: 507 SNGCCLNVSVSVYIILYIGFRNTRTLCK*HYLETYVHLKNINKQLQLKIITVFRTLLYYN 328
           S  C  N+++ +YI LY  F   + +     L  Y+ L N NK L LK I   + +L   
Sbjct: 129 SKKCIYNLNI-IYIKLYNKFNGIKNMIN---LPKYIFLTNFNKNLILKEILKLKLILISF 184

Query: 327 INIYTRKVNSLQYGTKIIG 271
           IN+    ++S     KI+G
Sbjct: 185 INL---SLDSSNINIKILG 200


>UniRef50_A3DI41 Cluster: ATPase; n=2; Clostridium|Rep: ATPase -
           Clostridium thermocellum (strain ATCC 27405 / DSM 1237)
          Length = 347

 Score = 32.7 bits (71), Expect = 6.6
 Identities = 14/50 (28%), Positives = 29/50 (58%)
 Frame = -1

Query: 399 HLKNINKQLQLKIITVFRTLLYYNINIYTRKVNSLQYGTKIIGRQGLIVI 250
           ++ ++ KQ  +K++ V      +N+N Y  +++  +YG KI  RQ ++ I
Sbjct: 126 YINHLFKQSNIKVLDV-ENFSTFNVNFYPDEIDEKKYGIKISPRQNILKI 174


>UniRef50_Q54M80 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 484

 Score = 32.3 bits (70), Expect = 8.7
 Identities = 18/64 (28%), Positives = 32/64 (50%)
 Frame = -1

Query: 498 CCLNVSVSVYIILYIGFRNTRTLCK*HYLETYVHLKNINKQLQLKIITVFRTLLYYNINI 319
           C +NV ++  I+LY+ FR  +T+      + + +L  INK   L +  +   L +Y I  
Sbjct: 7   CLINVFINYIILLYLNFRQIKTIKNSKIPKEFKNLSIINKSEFLNLKQLKYNLKFYFIKK 66

Query: 318 YTRK 307
             +K
Sbjct: 67  KKKK 70


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 502,847,001
Number of Sequences: 1657284
Number of extensions: 8659550
Number of successful extensions: 15940
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15935
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41073165837
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)