Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25d09
         (591 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1295 + 29100322-29100391,29100774-29100781,29101571-291016...    27   8.5  
04_04_0491 - 25605560-25605684,25605826-25605928,25606026-256075...    27   8.5  

>06_03_1295 +
           29100322-29100391,29100774-29100781,29101571-29101676,
           29101994-29102264,29102331-29103188,29103280-29103388
          Length = 473

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -1

Query: 552 AFTTVSE*QIMKTFFSNGCCLNVSVSVYIILYIGFR-NTRTLCK 424
           A+  VSE  I  +FF     L +S+ VY++L + F   +R  CK
Sbjct: 116 AYVDVSETSIGNSFFITQFNLPLSLPVYVVLCLSFPVPSRNACK 159


>04_04_0491 -
           25605560-25605684,25605826-25605928,25606026-25607592,
           25608694-25610198
          Length = 1099

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 358 HCVSYTFIL*YQYLYTKSKFVTIW 287
           HC SY  +   +Y++ K K V +W
Sbjct: 436 HCFSYCSLFPKEYVFRKDKLVRLW 459


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,903,548
Number of Sequences: 37544
Number of extensions: 207351
Number of successful extensions: 299
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 294
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)