Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25d09
         (591 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69662-6|CAA93501.1|  283|Caenorhabditis elegans Hypothetical pr...    31   0.46 
U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical pr...    28   4.3  

>Z69662-6|CAA93501.1|  283|Caenorhabditis elegans Hypothetical
           protein F56D5.10 protein.
          Length = 283

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 21/72 (29%), Positives = 35/72 (48%)
 Frame = -1

Query: 498 CCLNVSVSVYIILYIGFRNTRTLCK*HYLETYVHLKNINKQLQLKIITVFRTLLYYNINI 319
           C + V +SVY ILY+  R    L   H+      L+ I+  L+L  I+     +Y+ +  
Sbjct: 197 CFIGVYLSVYEILYLHMR----LYPQHFENLPFELQTISYDLRLLAISSLNFFVYFVLTK 252

Query: 318 YTRKVNSLQYGT 283
            TRK+    +G+
Sbjct: 253 STRKIVLKSFGS 264


>U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical protein
            T20F7.5 protein.
          Length = 1065

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = -1

Query: 450  FRNTRTLCK*HYLETYVHLKNINKQLQLKIITVFRTLLYYNINIY 316
            FR T  +C    LE    +KN N+ L LK     R   Y+  NIY
Sbjct: 978  FRKTHDICILRELEA---IKNYNQTLDLKHARAVRQYQYWKDNIY 1019


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,222,548
Number of Sequences: 27780
Number of extensions: 229228
Number of successful extensions: 410
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)