Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25d07
         (731 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132952-5|CAB61137.1|  498|Caenorhabditis elegans Hypothetical ...    33   0.28 
Z81542-3|CAB04415.1|  308|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AF067942-6|AAG45579.1|  345|Caenorhabditis elegans Hypothetical ...    28   7.8  

>AL132952-5|CAB61137.1|  498|Caenorhabditis elegans Hypothetical
           protein Y51H4A.5 protein.
          Length = 498

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 22/73 (30%), Positives = 31/73 (42%)
 Frame = +2

Query: 77  KTCVLKRNCYEMKSIRCVFYFQNISTKA*SWTVKVLLFFTEFNKCIVSIKSSFENQANNT 256
           K   +K+  +  K  +    F+N+  K    T+ + LFF  FN CI      F N A N 
Sbjct: 108 KNTTIKKQKHNFKQRKKYRTFENVFEKFREKTLNLELFFACFNTCIFRSNRIFFNSAANL 167

Query: 257 DNIHNVKNIFSIF 295
            N   +   F IF
Sbjct: 168 -NFATILVFFLIF 179


>Z81542-3|CAB04415.1|  308|Caenorhabditis elegans Hypothetical
           protein F49A5.4 protein.
          Length = 308

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 487 LVEGAQRGRQVSAFALETLNFVCGLARLTHD 395
           +  G Q G+  SA   ET++FVC L    +D
Sbjct: 157 MTNGTQAGKWASASCTETMSFVCELPATIYD 187


>AF067942-6|AAG45579.1|  345|Caenorhabditis elegans Hypothetical
           protein ZK6.4 protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +2

Query: 56  LTRTTASKTCVLKRNCYEMKSI--RCVF 133
           +TRTT  K C L  NC+    I  +CVF
Sbjct: 36  ITRTTPVKKCYLGENCFTKTPITQKCVF 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,710,478
Number of Sequences: 27780
Number of extensions: 388663
Number of successful extensions: 1238
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)