Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25d02
         (670 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0201 - 23555336-23556008,23556097-23556258,23556353-235572...    31   0.63 
01_01_0092 + 722744-723459,723542-723711,723792-724885                 29   3.3  
12_02_0719 + 22500217-22500395,22500506-22500551,22500671-225007...    29   4.4  
01_03_0009 + 11601394-11601666,11602486-11602683,11602809-116030...    28   5.9  

>04_04_0201 -
           23555336-23556008,23556097-23556258,23556353-23557206,
           23557452-23557613,23558197-23558649,23559729-23559788,
           23559983-23560058,23561546-23561593,23561948-23562022,
           23562067-23562494
          Length = 996

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 23/81 (28%), Positives = 38/81 (46%)
 Frame = +1

Query: 418 TYSLPVNSSAADVTAELTSDGYLVVTAPISENVDKTKNTERVVPIVETGAPYKKDEPVXK 597
           T S+ V+  AA      + +G + VT+ +S+ VD+      V+P+    A  + DE   K
Sbjct: 659 TASMQVHEGAAAAQLGESPEG-VDVTSAVSDEVDRDDKATHVLPLAAAAADGESDELERK 717

Query: 598 TTVETLDVSTTQEPKTSAPAV 660
                LD   T +  T++ AV
Sbjct: 718 R--RKLDSCATMDMSTASRAV 736


>01_01_0092 + 722744-723459,723542-723711,723792-724885
          Length = 659

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 139 VQPVTITDDQFTFPWLNLSPFSLFAPLWKLIPTFVDIGPRIY 264
           V+ ++  + +F     NL   S   PLW  +P F D+G ++Y
Sbjct: 89  VKDISYNESRFWVVDANLDNSSCPLPLWNNLPYFNDMGTKLY 130


>12_02_0719 +
           22500217-22500395,22500506-22500551,22500671-22500745,
           22500846-22500932,22501077-22501148,22501267-22501338,
           22501448-22501519,22501644-22502510
          Length = 489

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = +1

Query: 493 TAPISENVDKTKNTERVVPIVETGAPYKKDEPVXKTTVETLDVSTTQEPKTSAPA 657
           T P+ +   K +      P+ ET      +E    T  ETL V   +E  T++ A
Sbjct: 274 TTPMVQTEVKLEEETETTPVAETTEVKPAEETETSTVAETLQVKPAEETDTTSMA 328


>01_03_0009 +
           11601394-11601666,11602486-11602683,11602809-11603081,
           11603493-11603595,11603666-11603784,11604038-11604214,
           11604443-11605192
          Length = 630

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 49  MFSPRLFAVFIAFAGFTTVTALPARDKEVIVQPV-TITDDQFTFPWLNL 192
           +FS + F VF+  AGF+    L    K  I++P  TI  D+ T  +L L
Sbjct: 129 LFSKKPFPVFLELAGFSPEDVLIEEPKAGILKPAHTILRDECTKSFLVL 177


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,164,617
Number of Sequences: 37544
Number of extensions: 284529
Number of successful extensions: 823
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)