Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25c24
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    27   1.6  
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy...    27   1.6  
SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces p...    27   1.6  
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    27   1.6  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    27   1.6  
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.8  
SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces ...    26   3.7  
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo...    26   4.9  

>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
 Frame = +2

Query: 281 HNATNINSFSTVIPNEKYLV-----ISKDKTRYSNLRSLSQCKSINYVYYICNIVKILST 445
           H     N  S  +P E  L+     I       +N+ SLS+C  +N +   CN++     
Sbjct: 575 HLYLQFNDLSNRLPQEIGLLKNLETIDLSYNAITNIASLSECPKLNSINVACNLLSFYE- 633

Query: 446 NANPS 460
            +NPS
Sbjct: 634 YSNPS 638


>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 613

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 422 NIVKILSTNANPSCESELVSKAITTLPTLCK 514
           NIV+ LS+N  PS ESE +S   T   T  K
Sbjct: 60  NIVESLSSNEIPSAESEYLSTRSTITNTAMK 90


>SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
 Frame = +2

Query: 83  LVENHRHLPSDLELATSLD-LKHIHTLMKISNVISYFFNDKIM 208
           + ++H ++P D+ELA  +  LKH+ ++  +S  I Y F  KI+
Sbjct: 173 VAKSHSNIPKDIELACVIRYLKHLKSVPNVSYYI-YKFPFKIL 214


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 116 LELATSLDLKHIHTLMKISNVISYFFNDKIMF 211
           LE++T LD K I  L +    +SY F+DK ++
Sbjct: 15  LEISTYLDYKDIVHLSETCKSLSYVFDDKTIW 46


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 8/84 (9%)
 Frame = +2

Query: 257  LCIPLPVPHNATNINSFSTVIPN--EKYLV----ISKDKTRYSNLRSLSQCKSINYVYYI 418
            L  P+P P    N+ +F+ +IP+  EK L+    I +++ + S +  L   K ++ V + 
Sbjct: 890  LATPIPEPVPVDNMPTFTVLIPHYAEKILLSLREIIREEDQLSRVTLLEYLKQLHPVEWD 949

Query: 419  CNI--VKILSTNANPSCESELVSK 484
            C +   KIL    N   E++ VS+
Sbjct: 950  CFVKDTKIL-VEENAPYENDSVSE 972


>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 330

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 196 R*DHVRFTNPVSRTSRIQCIPLYPITCTS*RYK 294
           R +H RF  PV   +RI  +PL  + C   +YK
Sbjct: 24  RANHTRF-RPVDEKNRINAVPLLLLGCLYGKYK 55


>SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 558 LSGSHTSMIPWINLVLHRVGKVVMALETNSLSQDGLAFVERI 433
           +  S  S IP+I L++H + KV  A   NS   D  A   +I
Sbjct: 200 MDSSSLSEIPYIVLIIHVLLKVSPAHAQNSQEADDCAMFRKI 241


>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1183

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
 Frame = +2

Query: 113 DLELATSLDLKHIHTLMKISNVISYFFNDKIMFVLQIPLVEPQEFNVYLCIPLPVPHN-- 286
           DL+  T  D+  + T    S+ ++Y    + M+VL +  +   E  + +    P  H   
Sbjct: 674 DLQSETE-DIDQVPT--SSSSSVTYDDESEPMYVLPLYSLLTTEDQMKVFDSSPEGHRMC 730

Query: 287 --ATNINSFSTVIPNEKYLV-ISKDKTRYSNLRSLSQCKSINYV 409
             ATN+   S  IPN +Y+V   K K R  N ++  Q   + ++
Sbjct: 731 IVATNVAETSITIPNIRYVVDCGKAKERVYNEKTSVQKFEVRWI 774


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,538,875
Number of Sequences: 5004
Number of extensions: 52585
Number of successful extensions: 152
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)