Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25c24
(607 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78539-8|CAE17715.1| 223|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z69661-7|CAE17832.1| 223|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z92973-7|CAB07494.1| 1213|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z81481-10|CAB03951.1| 1213|Caenorhabditis elegans Hypothetical p... 28 5.9
Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical p... 28 5.9
Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical p... 28 5.9
AC024812-8|AAF59557.4| 912|Caenorhabditis elegans Hypothetical ... 28 5.9
AF067609-1|ABB51195.1| 394|Caenorhabditis elegans Hypothetical ... 27 7.9
>Z78539-8|CAE17715.1| 223|Caenorhabditis elegans Hypothetical
protein F48F7.8 protein.
Length = 223
Score = 29.1 bits (62), Expect = 2.6
Identities = 23/88 (26%), Positives = 39/88 (44%)
Frame = -2
Query: 564 LLLSGSHTSMIPWINLVLHRVGKVVMALETNSLSQDGLAFVERIFTMLQM*YT*LIDLHW 385
+LLSG W++ + + + + L + ++ ++ RIF L Y L
Sbjct: 123 ILLSGFAEYFTLWLHRIFYSLASPYILL--SGFTEYFTLWLRRIFYSLASPYILLSGFTE 180
Query: 384 LRDLKLLYRVLSLLITRYFSFGITVLKE 301
L LYR+ L + +F FG +LKE
Sbjct: 181 YFTL-WLYRIFYSLASHFFEFGFEILKE 207
>Z69661-7|CAE17832.1| 223|Caenorhabditis elegans Hypothetical
protein F48F7.8 protein.
Length = 223
Score = 29.1 bits (62), Expect = 2.6
Identities = 23/88 (26%), Positives = 39/88 (44%)
Frame = -2
Query: 564 LLLSGSHTSMIPWINLVLHRVGKVVMALETNSLSQDGLAFVERIFTMLQM*YT*LIDLHW 385
+LLSG W++ + + + + L + ++ ++ RIF L Y L
Sbjct: 123 ILLSGFAEYFTLWLHRIFYSLASPYILL--SGFTEYFTLWLRRIFYSLASPYILLSGFTE 180
Query: 384 LRDLKLLYRVLSLLITRYFSFGITVLKE 301
L LYR+ L + +F FG +LKE
Sbjct: 181 YFTL-WLYRIFYSLASHFFEFGFEILKE 207
>Z92973-7|CAB07494.1| 1213|Caenorhabditis elegans Hypothetical protein
C38D9.5 protein.
Length = 1213
Score = 27.9 bits (59), Expect = 5.9
Identities = 20/80 (25%), Positives = 32/80 (40%)
Frame = +2
Query: 233 EPQEFNVYLCIPLPVPHNATNINSFSTVIPNEKYLVISKDKTRYSNLRSLSQCKSINYVY 412
EP +F CIP + N +F + N Y+ + SN L +C +
Sbjct: 825 EPVDFGSGTCIPAYIHILRNNYGAFKKCLKNGAYVNAKVQSHKQSN-TMLHECVAQGKTK 883
Query: 413 YICNIVKILSTNANPSCESE 472
YI ++K +T + E E
Sbjct: 884 YIETLIKYGATTKILNHEGE 903
>Z81481-10|CAB03951.1| 1213|Caenorhabditis elegans Hypothetical
protein C38D9.5 protein.
Length = 1213
Score = 27.9 bits (59), Expect = 5.9
Identities = 20/80 (25%), Positives = 32/80 (40%)
Frame = +2
Query: 233 EPQEFNVYLCIPLPVPHNATNINSFSTVIPNEKYLVISKDKTRYSNLRSLSQCKSINYVY 412
EP +F CIP + N +F + N Y+ + SN L +C +
Sbjct: 825 EPVDFGSGTCIPAYIHILRNNYGAFKKCLKNGAYVNAKVQSHKQSN-TMLHECVAQGKTK 883
Query: 413 YICNIVKILSTNANPSCESE 472
YI ++K +T + E E
Sbjct: 884 YIETLIKYGATTKILNHEGE 903
>Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 290 TNINSFSTVIPNEKYLVISKDKTRYSNLRSLSQCKSI-NYVYYICNIVKILSTN 448
TN+ +S + +V + +S+L S S K I +++YY+ N +L+TN
Sbjct: 1091 TNVGIYSPMTVEGSLIVDGVLSSCFSHLESHSAHKLIFDFIYYVYNAFGLLNTN 1144
>Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 290 TNINSFSTVIPNEKYLVISKDKTRYSNLRSLSQCKSI-NYVYYICNIVKILSTN 448
TN+ +S + +V + +S+L S S K I +++YY+ N +L+TN
Sbjct: 1091 TNVGIYSPMTVEGSLIVDGVLSSCFSHLESHSAHKLIFDFIYYVYNAFGLLNTN 1144
>AC024812-8|AAF59557.4| 912|Caenorhabditis elegans Hypothetical
protein Y54E10BR.1 protein.
Length = 912
Score = 27.9 bits (59), Expect = 5.9
Identities = 27/127 (21%), Positives = 59/127 (46%)
Frame = +2
Query: 122 LATSLDLKHIHTLMKISNVISYFFNDKIMFVLQIPLVEPQEFNVYLCIPLPVPHNATNIN 301
+ATSL + H LMK + ++ Y D+ M + F ++ + + HN+T+
Sbjct: 389 VATSLFADNAH-LMKEA-IVFYHRYDRQMLGAAVSC----SFVAWIALVVSFLHNSTSKE 442
Query: 302 SFSTVIPNEKYLVISKDKTRYSNLRSLSQCKSINYVYYICNIVKILSTNANPSCESELVS 481
+ S ++P+ +++ ++ SLS ++I Y+ ++ IL ++ +
Sbjct: 443 NLSLLVPHHLFIIPLACSLLFTAYCSLSMTQTI-YIILPIYLISILENHSKLTQRIREHV 501
Query: 482 KAITTLP 502
KA++ P
Sbjct: 502 KALSAQP 508
>AF067609-1|ABB51195.1| 394|Caenorhabditis elegans Hypothetical
protein C23H5.11 protein.
Length = 394
Score = 27.5 bits (58), Expect = 7.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 156 VCMCFKSRLVANSKSLGKCR*FSTSSW 76
+C+CF RL+ + +CR +S+ SW
Sbjct: 109 LCLCFTIRLLLLLNCIRRCRRWSSVSW 135
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,674,830
Number of Sequences: 27780
Number of extensions: 281957
Number of successful extensions: 685
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 671
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -