Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25c19
(611 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0994 - 13067254-13067379,13067483-13067521,13067824-130678... 31 0.54
01_05_0490 + 22672241-22674679 31 0.54
12_02_1152 + 26515422-26515460,26516317-26516454,26518647-265188... 29 2.2
07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462 29 2.2
03_06_0422 + 33818887-33819996 29 2.2
02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505 29 2.2
02_02_0059 - 6432945-6433115,6433975-6434061,6434585-6434787,643... 29 2.9
11_08_0007 + 27551173-27551828,27552071-27552282,27553371-275535... 29 3.8
06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247 29 3.8
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376... 29 3.8
11_01_0662 - 5389746-5390548,5390727-5391368,5391624-5391659,539... 28 6.7
03_05_0677 + 26663880-26664581 27 8.9
02_05_0044 - 25375239-25376233,25377233-25377364,25377586-25378504 27 8.9
02_01_0775 + 5775949-5777385 27 8.9
>03_02_0994 -
13067254-13067379,13067483-13067521,13067824-13067893,
13068025-13068116,13068237-13068319,13068590-13068633,
13068682-13068800,13068883-13068915,13069152-13069239,
13069364-13069413
Length = 247
Score = 31.5 bits (68), Expect = 0.54
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 90 VCRQTDRPCSQVCHLLQLCTGATTCSCTHPYTDGTCCPYTALC 218
VC T++P +QVC+ +C G CS + D C LC
Sbjct: 51 VC-DTEQPVAQVCYNCGVCMGEYFCSACKFFDDDVRCRCCLLC 92
>01_05_0490 + 22672241-22674679
Length = 812
Score = 31.5 bits (68), Expect = 0.54
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +2
Query: 233 RPHRSLRTLTLLPNSLVLVQRQWE*LVPELVLEQSSAPSSSAMPGTPP 376
+P + + T+T P L R+W + E+VLEQ S + MP PP
Sbjct: 296 QPQQPVETVTPTPPPLAR-SRRWNPEMLEVVLEQESRVEETTMPPPPP 342
>12_02_1152 +
26515422-26515460,26516317-26516454,26518647-26518809,
26519165-26519213,26519315-26519390,26520348-26520473
Length = 196
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = -3
Query: 267 SRVNVLSDRCGLEGPHCRELCRDSRYHLCMGGYSCKWSHQCRVAEDGRPGCRGDQSG 97
S +N+++ RCG HC L + L + + H + E G GC DQSG
Sbjct: 20 SMLNIVTVRCG----HCTNLLSVNLRGLMHSAPALQDHHHHHLQESGLSGCFRDQSG 72
>07_03_0954 - 22864240-22864403,22864821-22864935,22865421-22865462
Length = 106
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +3
Query: 90 VCRQTDRPCSQVCHLLQLCTGATTCSCTHPYTDG 191
+CRQ + C CH++ LC G + S P T G
Sbjct: 38 ICRQVEAGCFAHCHIV-LCKGEPSRSPFRPVTSG 70
>03_06_0422 + 33818887-33819996
Length = 369
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = -3
Query: 477 ESEEQQERHHKTEQTHGLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSSGTS 307
E ++ER + E+T L + N E ++L+G D+ +D SNTSSG S
Sbjct: 156 ERMRERERERRRERTESLILINSNN---EAIILQGT---FGPDDNQDDSSNTSSGVS 206
>02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505
Length = 213
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = -2
Query: 244 PMWSGRTALQRAV*GQQVPSVYGWVQLQVVAPVQSCRRWQTWLQGRSVW 98
P+W G ++ AV G + P+ +G+ + ++ P Q+ + W+ VW
Sbjct: 8 PVWHGVWMVEDAVTGDEFPAWHGYGRRRMQPPGQAPAWCRAWIAKDVVW 56
>02_02_0059 -
6432945-6433115,6433975-6434061,6434585-6434787,
6435281-6435392,6435473-6435517,6435622-6435726,
6435946-6435996,6436026-6436103,6437258-6437313,
6437784-6437853,6438288-6438392,6438525-6438637,
6439354-6439534,6439635-6440390
Length = 710
Score = 29.1 bits (62), Expect = 2.9
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 92 LPPD*SPLQPGLPSSATLHWCDHLQLYPPIHRWYLLSLHSSLQCGPSRPHRS--LRTLTL 265
+PP PL+P +PSS+ H LQ + L +HS +RP S L L
Sbjct: 183 VPPPPPPLEPPVPSSSDYHAKPPLQAV----KSSLFPIHSGSPAATARPPSSHTLHQAHL 238
Query: 266 LPNS 277
+PN+
Sbjct: 239 MPNA 242
>11_08_0007 +
27551173-27551828,27552071-27552282,27553371-27553550,
27555154-27556187
Length = 693
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Frame = -3
Query: 333 CSNTSSGTSYSHCRCT---STNEF--GSRVNVLSDRCGLEGPHCRELCRDSRYHLCMGGY 169
C N ++G Y C C+ S N + G +N+ EGP SR + GGY
Sbjct: 261 CVNATNGKGYL-CNCSAGYSGNPYVTGGCININECELRREGPAMYPCYSGSRCYDTEGGY 319
Query: 168 SCK 160
CK
Sbjct: 320 KCK 322
>06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247
Length = 974
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Frame = -3
Query: 525 LICRMAVVVFLKVNSLESEEQQERHHKTEQTHGLRQGETQNGV*EQLLLEGGVPGIADDE 346
L C + + + + ++ +T + Q T NG E L GG ++ +
Sbjct: 331 LACIIVLKAIISCQTYSNDRSNNVEEQTSTGNCRAQINTSNGGAESLSSNGGAESVSSNG 390
Query: 345 GAEDCSNTSSG--TSYSHCRCTSTNEFGSRVN 256
GAE S+ + T+ + T T+ G++ N
Sbjct: 391 GAESVSSNARAQPTTTNGGEETKTSNAGAQKN 422
>06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,
3764013-3764961,3766967-3767064,3768144-3768284,
3768758-3768874,3768924-3769013,3769014-3771818
Length = 1632
Score = 28.7 bits (61), Expect = 3.8
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Frame = -3
Query: 321 SSGTSYSHCRCT--STNEFGSRVNVLSDRCGLEGPHCRELCRDSRYHLCMGGYSCKWSHQ 148
SSGT + +C S N+ S ++ S+ + L +D YH C G S +
Sbjct: 1441 SSGTLNNFAKCCGDSANK-NSLLDQTSENVSTDHQEVSMLPQDQHYHSCSGDTSSALEYS 1499
Query: 147 CRVAEDGRPGCRG--DQSGGRQHF 82
A DG R DQ GG +
Sbjct: 1500 DTNAGDGDSEHRNSFDQKGGESMY 1523
>11_01_0662 -
5389746-5390548,5390727-5391368,5391624-5391659,
5392314-5392377
Length = 514
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 486 NSLESEEQQERHHKTEQTHGLRQ 418
NS+ E QE+ H E+TH LRQ
Sbjct: 62 NSIFYSESQEQKHVKEETHRLRQ 84
>03_05_0677 + 26663880-26664581
Length = 233
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 125 LPSSATLHWCDHLQLYPPIHRWYLLSLHS 211
LP + C HL +P I+RW + HS
Sbjct: 30 LPQEPIVTLCGHLFCWPCIYRWLHIHAHS 58
>02_05_0044 - 25375239-25376233,25377233-25377364,25377586-25378504
Length = 681
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = +3
Query: 84 NAVCRQTDRPCSQVCHLLQLCTGATTCSCTHPYTDGTCCPYTALCSAVLPDHI 242
+A+ ++ C+ + + +G TC CT+ Y G PY L + DHI
Sbjct: 260 SALVNKSSYACTTGSNCQNISSGGYTCECTNRYLQGN--PY-ILGGCNMQDHI 309
>02_01_0775 + 5775949-5777385
Length = 478
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/39 (33%), Positives = 15/39 (38%)
Frame = -3
Query: 177 GGYSCKWSHQCRVAEDGRPGCRGDQSGGRQHFVFIRCGA 61
GG +W Q RV G GC G + CGA
Sbjct: 347 GGMVVEWCDQVRVLSHGAVGCFVTHCGWNSTLEAVACGA 385
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,774,667
Number of Sequences: 37544
Number of extensions: 392824
Number of successful extensions: 1386
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1385
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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