Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25c19
(611 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.) 85 4e-17
SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0) 31 0.74
SB_30565| Best HMM Match : Metallothio (HMM E-Value=1.8) 31 0.74
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_9671| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0) 30 1.3
SB_47507| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_34777| Best HMM Match : VWA (HMM E-Value=0) 30 1.3
SB_52148| Best HMM Match : EGF (HMM E-Value=0) 29 2.2
SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0) 29 2.2
SB_20479| Best HMM Match : Collagen (HMM E-Value=1) 29 3.0
SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28) 29 3.0
SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13) 29 3.9
SB_56455| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.2
SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095) 28 5.2
SB_47717| Best HMM Match : EGF (HMM E-Value=1.9e-29) 28 6.9
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10) 28 6.9
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_41598| Best HMM Match : HLH (HMM E-Value=2.2) 28 6.9
SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25) 28 6.9
SB_47055| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0) 27 9.1
SB_36437| Best HMM Match : Helicase_C (HMM E-Value=2e-13) 27 9.1
SB_30783| Best HMM Match : RasGAP (HMM E-Value=3.2e-34) 27 9.1
SB_10060| Best HMM Match : SAP (HMM E-Value=0.016) 27 9.1
>SB_58279| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 744
Score = 85.0 bits (201), Expect = 4e-17
Identities = 50/96 (52%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Frame = +1
Query: 142 SALVRPLAAVPTHTQMVPAVPTQLS-AVRSFQTTSVTKDIDSAAKFXXXXXXXXXXXXXX 318
+A +RP + +VPA P + A R FQT+S +D+DSAAKF
Sbjct: 61 TAAIRPQSQALVKA-VVPASPLLGALASRGFQTSSAVQDVDSAAKFIGAGAATVGAAGSG 119
Query: 319 XXXXXXFGSLIIGYARNPSLKQQLFSYAILGFALSE 426
FGSLIIGYARNPSLKQQLFSYAILGFALSE
Sbjct: 120 AGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSE 155
>SB_35194| Best HMM Match : EGF_2 (HMM E-Value=0)
Length = 960
Score = 31.1 bits (67), Expect = 0.74
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 12/104 (11%)
Frame = -3
Query: 366 PGIADDEGAEDCSNTSSGTSYSH-CRCTSTNEFGSRVNVLSDRC----------GLEGPH 220
PG ++ C + G + +H C CT+ G+R N ++ +C G GP
Sbjct: 346 PGWTGPFCSKPCPPSLWGHNCAHPCNCTN----GARCNAVTGQCACTDGCSCNAGWTGPE 401
Query: 219 CRELC-RDSRYHLCMGGYSCKWSHQCRVAEDGRPGCRGDQSGGR 91
CR+ C DS C C + +C A GR C +G R
Sbjct: 402 CRDPCGLDSWGPGCTNTCQCSRNGECDAA-SGRCACAPGFTGDR 444
Score = 27.9 bits (59), Expect = 6.9
Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Frame = -3
Query: 303 SHCRCT-STNEFGSRVNVLSDRC----GLEGPHCRELCRDSRY-HLCMGGYSCKWSHQCR 142
S CRC S + + ++ +C G GP C E C + RY C C CR
Sbjct: 737 SSCRCDPSKTDVKKPCDHVTGQCNCRPGYRGPRCLEQCPEGRYGDQCARKCECDNRVPCR 796
Query: 141 VAEDG 127
A DG
Sbjct: 797 -ATDG 800
>SB_30565| Best HMM Match : Metallothio (HMM E-Value=1.8)
Length = 565
Score = 31.1 bits (67), Expect = 0.74
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -3
Query: 276 EFGSRVNVLSDRCGLEGPHCR-ELCRDSRYHLC-MGGYSC 163
E R NVLSD GLE CR LC + + C GG C
Sbjct: 76 EASQRCNVLSDAPGLETESCRCTLCDERGFSACRSGGLRC 115
>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1850
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Frame = -3
Query: 408 QNG-V*EQLLLE--GGVPGIADDEGAEDCSNTS---SGTSYSHCRCTSTNEFGSRVNVLS 247
QNG + E++L++ G + G + ++T S T + H CT ++ + L
Sbjct: 1728 QNGPIMEKILVQLPGSIAGYTNTNSGAAANSTDIPESRTCFDHDECTQYSQVQCNEDWLK 1787
Query: 246 DRCGLEGPHCRELCRDS 196
C + +CR +C D+
Sbjct: 1788 INCPKKCKYCRPVCEDT 1804
>SB_9671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 30.3 bits (65), Expect = 1.3
Identities = 29/77 (37%), Positives = 29/77 (37%), Gaps = 11/77 (14%)
Frame = +3
Query: 99 QTD-RPCSQVCHLLQLCTGATTCS---CTHPYTDGTC---CPYTALC--SAVLPDHIGH* 251
QTD CSQ CH L C G T C G C C T LC S V H
Sbjct: 54 QTDFSSCSQSCHFLHSCPGMTCTGRDVCDQKCFFGKCDMSCHATDLCSQSCVWESHC--- 110
Query: 252 GH*LCCQIHWCW--CSD 296
H L C C CSD
Sbjct: 111 -HALTCTARICHQICSD 126
>SB_7335| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 2681
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Frame = -3
Query: 408 QNG-V*EQLLLE--GGVPGIADDEGAEDCSNTS---SGTSYSHCRCTSTNEFGSRVNVLS 247
QNG + E++L++ G + G + ++T S T + H CT ++ + L
Sbjct: 52 QNGPIMEKILVQLPGSIAGYTNTNSGAAANSTDIPESRTCFDHDECTQYSQVQCNEDWLK 111
Query: 246 DRCGLEGPHCRELCRDS 196
C + +CR +C D+
Sbjct: 112 INCPKKCKYCRPVCEDT 128
>SB_47507| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 917
Score = 30.3 bits (65), Expect = 1.3
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -3
Query: 237 GLEGPHCRELCRDSRYHLCMGGYSCKWSHQCRVAEDGR-PGCRGDQSGGRQ 88
G + P E CR + C C+++HQC E+G P S GR+
Sbjct: 365 GRDRPTSSEACRSWNFAKCFFP-GCRYTHQCAYCENGNYPARECPSSAGRK 414
>SB_34777| Best HMM Match : VWA (HMM E-Value=0)
Length = 1268
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = -3
Query: 477 ESEEQQERHHKTEQTHGLR----QGETQNGV*EQLLLEGGVPGIADDEGAE 337
+ + QER +TEQTHG QG+ Q +Q ++G G + D+G E
Sbjct: 636 DQNQTQERQGQTEQTHGPDPGEVQGQEQGQGQDQSHVQGQEEGHSQDQGQE 686
>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
Length = 1055
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Frame = +3
Query: 159 TCSCTHPYTDGTCCPYTALC---SAVLPDHIGH*GH*LCCQIHWCWCSDSGSS 308
TC C YT TC + C S V + +G+ GH C+ CW SG+S
Sbjct: 330 TCECFSGYTGPTCAVVESACKPTSCVNGECVGN-GHNSSCK---CWKGYSGAS 378
>SB_41134| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 802
Score = 29.5 bits (63), Expect = 2.2
Identities = 20/80 (25%), Positives = 31/80 (38%)
Frame = -3
Query: 345 GAEDCSNTSSGTSYSHCRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSRYHLCMGGYS 166
G D + G+ CR ++ + + C C +LCRD+ GGY
Sbjct: 278 GCRDLCINTPGSFMCQCRQGYVLANDNKTCINLNECATRKHRCEQLCRDTD-----GGYY 332
Query: 165 CKWSHQCRVAEDGRPGCRGD 106
C+ +V DG C G+
Sbjct: 333 CECHKGYQVGPDGM-SCIGN 351
>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
Length = 1214
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -3
Query: 507 VVVFLKVNSLESEEQQERHHKTEQTHGLRQGETQNG 400
+V LK ESEE E H EQ H +Q +T NG
Sbjct: 208 LVPSLKKPRCESEEDDEEEHDLEQCHD-QQKDTSNG 242
>SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)
Length = 859
Score = 29.1 bits (62), Expect = 3.0
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Frame = -3
Query: 492 KVNSLESEEQQERHHKTEQTHGLRQGETQNGV*EQLLLEGGVPGIADDEGAEDCSNTSS- 316
K++ L+ E Q H + + L +N V + +G +EGAE SS
Sbjct: 204 KIDELDEIESQTSEHASNEMQNL---SFENNV--WTVTDGDKEQETGEEGAEPTPGESSP 258
Query: 315 --GTSYSHCRCTSTNEFGSRVNVLSDRCGLEGPHCREL 208
GT+ + +++ + N LS++C + HC EL
Sbjct: 259 GAGTAPNALPNADSSKKLAEFNELSEKCRIMRVHCLEL 296
>SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1487
Score = 28.7 bits (61), Expect = 3.9
Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Frame = -3
Query: 366 PGIADDEGAEDCSNTSSGTSYSHCRCTSTNEFGSRVNVLSDRCGLEGPHCRE----LCRD 199
P + D++G C N S+G HC F + +C G C E C +
Sbjct: 355 PLVIDEDGECLCGNFSTGLLCKHC---VPGHFFLQGYCSRCQCNGHGSICDERGKCSCEN 411
Query: 198 SRYHLCMGGYSCKWSHQCRVAEDGRPGCRGD 106
+ C G + + +QC DG G D
Sbjct: 412 NTAEQCHSGQNDCYKNQCTKCVDGFLGSPAD 442
>SB_16478| Best HMM Match : C2 (HMM E-Value=2.2e-13)
Length = 186
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 146 HWCDHLQLYPPIHRWY-LLSLHSSLQCGPSRPHRSLRTL 259
HW + + PI RW+ L H+SL P+RP+R+ + +
Sbjct: 129 HWNEAMTAKKPIARWHSLREFHNSLL--PTRPNRTSKPI 165
>SB_56455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 28.3 bits (60), Expect = 5.2
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +3
Query: 114 CSQVCHLLQLCTGATTCSCTH 176
C++ CH + + AT+C C H
Sbjct: 35 CNRTCHRISIPENATSCKCGH 55
>SB_28756| Best HMM Match : C1_4 (HMM E-Value=0.095)
Length = 201
Score = 28.3 bits (60), Expect = 5.2
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -3
Query: 216 RELCRDSRYHLCMGGYSCKWSHQCR 142
R CR HLC+G C+W Q R
Sbjct: 173 RNGCRKCDVHLCVGDCFCEWHQQRR 197
>SB_47717| Best HMM Match : EGF (HMM E-Value=1.9e-29)
Length = 214
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 93 CRQTDRPCSQVCHLLQLCTGATTCSCTHPYTDGTC 197
C +T PCS+ + + TC+C YT TC
Sbjct: 88 CNETQSPCSEHGACID-GVNSYTCACNLGYTGSTC 121
>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6753
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/40 (30%), Positives = 15/40 (37%)
Frame = +3
Query: 102 TDRPCSQVCHLLQLCTGATTCSCTHPYTDGTCCPYTALCS 221
T +PC G C+CT Y D C Y C+
Sbjct: 864 TKQPCKNGATCTSQPDGRYKCTCTSRYKDENCTTYINECA 903
>SB_5030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 7/34 (20%)
Frame = +3
Query: 300 GSSWFRSWYWNSLR--LPHH-----RLCQEPLPQ 380
G +WF SW W + LPH+ + C E LP+
Sbjct: 261 GENWFLSWIWPKITSPLPHNGTDYTQACNEELPK 294
>SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10)
Length = 718
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +3
Query: 78 KQNAVCRQTDRPCSQVCHLLQLCTGATTCSCTHPYTDGTCCPYTALCSAVLPD 236
++ VC TD+PC + H ++ C T T P T C T S +PD
Sbjct: 489 RRERVCSDTDKPCQGLDHEVRECQ-VTRPDTTTPTMPTTLC--TIHYSQXVPD 538
>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3287
Score = 27.9 bits (59), Expect = 6.9
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 93 CRQTDRPCSQVCHLLQLCTGATTCSCTHPYTDGTC 197
C +T PCS+ + + TC+C YT TC
Sbjct: 667 CNETQSPCSEHGACID-GVNSYTCACNLGYTGSTC 700
>SB_41598| Best HMM Match : HLH (HMM E-Value=2.2)
Length = 519
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -3
Query: 294 RCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSRY 190
R T T +FG +VN+ S LEG R+ D+ +
Sbjct: 16 RATFTKDFGCQVNICSASASLEGEIQRQRNTDTNF 50
>SB_30577| Best HMM Match : Ldl_recept_a (HMM E-Value=2.8e-25)
Length = 147
Score = 27.9 bits (59), Expect = 6.9
Identities = 31/123 (25%), Positives = 48/123 (39%), Gaps = 3/123 (2%)
Frame = -3
Query: 477 ESEEQQERH-HKTEQTHGLRQGETQNG--V*EQLLLEGGVPGIADDEGAEDCSNTSSGTS 307
ES Q H H + HG Q + NG V ++L +G + D +C+ S+
Sbjct: 23 ESCHMQPLHAHPSHSCHG-DQFQCLNGMCVGQELRCDGDYACV-DHSDERNCACRSAEFK 80
Query: 306 YSHCRCTSTNEFGSRVNVLSDRCGLEGPHCRELCRDSRYHLCMGGYSCKWSHQCRVAEDG 127
+C ++F + + +D G + C C S H C G WS C D
Sbjct: 81 CPDGKCVHPSKFCNGESDCTD--GSDEWSCDNSC--SSRHACADGTCVTWSLTCNGVSDC 136
Query: 126 RPG 118
+ G
Sbjct: 137 QDG 139
>SB_47055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 933
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 267 SRVNVLSDRCGLEGPHCRELCRDSRYHLCMGGYSCKWSHQCRVAEDGR 124
SR L+D C L+ C ++C Y+LC C ++A DGR
Sbjct: 443 SRTAPLADLCQLDNGGCEQVC----YNLCNLKVKCGCYPGFKMAYDGR 486
>SB_43550| Best HMM Match : Laminin_EGF (HMM E-Value=0)
Length = 1182
Score = 27.5 bits (58), Expect = 9.1
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = -3
Query: 333 CSNTSSGTSYSHCRCTSTNEFGSRVNVLSDRC--GLEGPHCRELCRDSRY-HLCMGGYSC 163
C SSG +S T+ + +VL D+C G G C E C D Y + + G SC
Sbjct: 382 CPGGSSGNKFSESCYVDTST--TPPSVLCDKCQVGYTGRQCEE-CADGYYGNPLVPGGSC 438
Query: 162 K 160
K
Sbjct: 439 K 439
>SB_36437| Best HMM Match : Helicase_C (HMM E-Value=2e-13)
Length = 479
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 133 FCNSALVRPLAAVPTHTQMVPAVPTQLSAVRSF 231
+CN+ L R +VP T +VP T L V S+
Sbjct: 441 YCNNGLKRDGVSVPAFTTLVPEPRTSLYLVASW 473
>SB_30783| Best HMM Match : RasGAP (HMM E-Value=3.2e-34)
Length = 912
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 120 QVCHLLQLCTGATTCSCTH 176
QVCHLL +CT +C H
Sbjct: 542 QVCHLLSICTLIRPWACLH 560
>SB_10060| Best HMM Match : SAP (HMM E-Value=0.016)
Length = 332
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Frame = -3
Query: 222 HCRELCRDSRYHLCMGGYSCKWSHQCRVAEDGRPG--CRGDQSGGRQ 88
HC +C D +C + H C+ D P CR S G++
Sbjct: 272 HCNNVCFDFNRVTGCSRQACIYPHVCQKCADSHPAHQCRAGISAGQR 318
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,271,667
Number of Sequences: 59808
Number of extensions: 453103
Number of successful extensions: 1795
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1780
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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