Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25c19
         (611 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C su...    44   1e-04
At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol p...    28   4.2  
At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR...    28   5.6  
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    28   5.6  
At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative / th...    28   5.6  
At5g16780.1 68418.m01965 SART-1 family protein contains Pfam dom...    27   7.4  
At5g16540.3 68418.m01936 zinc finger (CCCH-type) family protein ...    27   7.4  
At5g16540.2 68418.m01935 zinc finger (CCCH-type) family protein ...    27   7.4  
At5g16540.1 68418.m01934 zinc finger (CCCH-type) family protein ...    27   7.4  
At3g13730.1 68416.m01733 cytochrome P450, putative similar to Cy...    27   7.4  
At1g68110.1 68414.m07780 epsin N-terminal homology (ENTH) domain...    27   7.4  
At5g11040.1 68418.m01290 expressed protein weak similarity to hy...    27   9.8  
At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR...    27   9.8  
At3g52110.1 68416.m05719 expressed protein                             27   9.8  
At3g48380.2 68416.m05281 expressed protein                             27   9.8  
At3g48380.1 68416.m05280 expressed protein                             27   9.8  

>At2g07671.1 68415.m00894 H+-transporting two-sector ATPase, C
           subunit family protein similar to ATPase subunit 9
           [Arabidopsis thaliana] GI:15215920; contains Pfam
           profile PF00137: ATP synthase subunit C
          Length = 85

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 21/30 (70%), Positives = 23/30 (76%)
 Frame = +1

Query: 337 FGSLIIGYARNPSLKQQLFSYAILGFALSE 426
           F SLI   ARNPSL +Q F YAILGFAL+E
Sbjct: 39  FSSLIHSVARNPSLAKQSFGYAILGFALTE 68


>At3g19390.1 68416.m02459 cysteine proteinase, putative / thiol
           protease, putative contains similarity to cysteine
           proteinase RD21A (thiol protease) GI:435619, SP:P43297
           from [Arabidopsis thaliana]
          Length = 452

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
 Frame = +3

Query: 111 PCSQVCHLLQLCTGATTCSCTHPYT----DGTCCPY-TALC 218
           P   VC     C   +TC C + Y        CCPY +A C
Sbjct: 358 PSPVVCDKSNTCPAKSTCCCLYEYNGKCYSWGCCPYESATC 398


>At4g11170.1 68417.m01809 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1095

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +2

Query: 71  LIKTKCCLPPD*SPLQPGLPSSATLH--WCDHLQLYPPI 181
           L++  CC   +  P    LPS   LH  +C  LQ +P I
Sbjct: 682 LLEMSCCKKLEIIPTNINLPSLEVLHFRYCTRLQTFPEI 720


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q12019)
            [Saccharomyces cerevisiae]; similar to Midasin
            (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
            sapiens]; contains Prosite PS00017: ATP/GTP-binding site
            motif A (P-loop)
          Length = 5336

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -1

Query: 275  NLAAESMSLVTDVVWKDRTAESCVGTAGTICVWVGTAASGRTS 147
            N+A+E + L+ ++         CV     +C+ VG ++SG+TS
Sbjct: 2028 NIASEQLKLLPEIRQNLEAVAHCVQNKW-LCILVGPSSSGKTS 2069


>At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative /
           threonine--tRNA ligase, putative similar to SP|O04630
           Threonyl-tRNA synthetase, mitochondrial precursor (EC
           6.1.1.3) (Threonine--tRNA ligase) (ThrRS) {Arabidopsis
           thaliana}; contains Pfam profiles PF00587: tRNA
           synthetase class II core domain (G, H, P, S and T),
           PF03129: Anticodon binding domain, PF02824: TGS domain
          Length = 458

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = +2

Query: 230 SRPHRSLRTLTLLPNSLVLVQRQWE*LVPELVLEQSSAPSSSAM 361
           SRPH  ++ +TLLP+ +    R+WE    ++ ++ S   + SA+
Sbjct: 37  SRPHDPIK-ITLLPDGIEKEGRRWETSPMDIAVQISKGLAKSAL 79


>At5g16780.1 68418.m01965 SART-1 family protein contains Pfam
           domain, PF03343: SART-1 family
          Length = 820

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -3

Query: 363 GIADDEGAEDCSNTSSGTSYSHCRCTSTNEFG 268
           GI DD+G ++  +  S   +   R   T+EFG
Sbjct: 660 GIVDDDGGKESKDKESKDRFKDIRIERTDEFG 691


>At5g16540.3 68418.m01936 zinc finger (CCCH-type) family protein
           identical to zinc finger protein 3 [Arabidopsis
           thaliana] gi|4689376|gb|AAD27875; contains Pfam domain,
           PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
          Length = 354

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 198 SRYHLCMGGYSCKWSHQCRV 139
           SRY +C  G SCK+ H  RV
Sbjct: 278 SRYGICKFGPSCKFDHPMRV 297


>At5g16540.2 68418.m01935 zinc finger (CCCH-type) family protein
           identical to zinc finger protein 3 [Arabidopsis
           thaliana] gi|4689376|gb|AAD27875; contains Pfam domain,
           PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
          Length = 368

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 198 SRYHLCMGGYSCKWSHQCRV 139
           SRY +C  G SCK+ H  RV
Sbjct: 292 SRYGICKFGPSCKFDHPMRV 311


>At5g16540.1 68418.m01934 zinc finger (CCCH-type) family protein
           identical to zinc finger protein 3 [Arabidopsis
           thaliana] gi|4689376|gb|AAD27875; contains Pfam domain,
           PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
          Length = 375

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 198 SRYHLCMGGYSCKWSHQCRV 139
           SRY +C  G SCK+ H  RV
Sbjct: 299 SRYGICKFGPSCKFDHPMRV 318


>At3g13730.1 68416.m01733 cytochrome P450, putative similar to
           Cytochrome P450 90C1 (ROTUNDIFOLIA3) (SP:Q9M066)
           [Arabidopsis thaliana]; identical to CYP90D
           (GI:14971017) [Arabidopsis thaliana]
          Length = 491

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
 Frame = -3

Query: 507 VVVFLKVNSLESEEQQER----HHKTEQTHG 427
           +V+F K+N L S    ++    HH T Q+HG
Sbjct: 18  IVIFNKINGLRSSPASKKKLNDHHVTSQSHG 48


>At1g68110.1 68414.m07780 epsin N-terminal homology (ENTH)
           domain-containing protein / clathrin assembly
           protein-related similar to clathrin assembly protein
           AP180 (GI:6492344) [Xenopus laevis]; contains Pfam
           profile: PF01417 ENTH domain, suggesting involvement in
           endocytosis or cytoskeletal machinery
          Length = 379

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 23  KAGLLLLGVLCCRAPHLIKTKCCLPPD*SPLQPG 124
           K+ +LL GVLCC+ P ++     LP D S    G
Sbjct: 90  KSLMLLHGVLCCKVPSVVGEFRRLPFDLSDFSDG 123


>At5g11040.1 68418.m01290 expressed protein weak similarity to
            hypercellular protein [Aspergillus nidulans] GI:9309269
          Length = 1186

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 258  NVLSDRCGLEGPHCRELCRDSRYHLCMGG 172
            NVL  R G   P+    CR   +H+C+ G
Sbjct: 1155 NVLRARAGTASPNEPIFCRGPPFHVCVAG 1183


>At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1234

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 354  DDEGAEDCSNTSSGTSYS-HCRCTSTNEFGSRVNVLSD 244
            DDE ++D  + SS T YS  C  +  ++ G+ ++   D
Sbjct: 1108 DDESSDDDDDLSSETDYSDECEDSDDSDLGNEIDYSED 1145


>At3g52110.1 68416.m05719 expressed protein 
          Length = 362

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = -2

Query: 157 VAPVQSCRRWQTWLQGRSVWRQTAFCFYKVRRATTKNTEKEETG 26
           V  ++S +  +    GR ++   +   Y+++R  T+ TE+E+TG
Sbjct: 136 VPRLKSTQSARNLFSGRDIFGHISDFCYELKRLATRVTEREDTG 179


>At3g48380.2 68416.m05281 expressed protein
          Length = 640

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 306 SWFRSWYWNSLRLPHHRLCQEPL 374
           SWFR  ++ S+ +P HR  Q+ L
Sbjct: 477 SWFRLQHYTSISVPSHREIQQTL 499


>At3g48380.1 68416.m05280 expressed protein
          Length = 645

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 306 SWFRSWYWNSLRLPHHRLCQEPL 374
           SWFR  ++ S+ +P HR  Q+ L
Sbjct: 482 SWFRLQHYTSISVPSHREIQQTL 504


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,738,630
Number of Sequences: 28952
Number of extensions: 288647
Number of successful extensions: 957
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)