Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25c16
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022967-2|AAB69880.1|  305|Caenorhabditis elegans Hypothetical ...    31   0.61 
AC006603-2|AAF39746.2|  507|Caenorhabditis elegans Hypothetical ...    31   0.81 
U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog (...    30   1.4  
U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog (...    30   1.4  
AF039041-5|AAB94187.1|  128|Caenorhabditis elegans Hypothetical ...    30   1.9  

>AF022967-2|AAB69880.1|  305|Caenorhabditis elegans Hypothetical
           protein C13A2.9 protein.
          Length = 305

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +3

Query: 510 GLYNSASAEFIFNIMHLTANVLLVPNALKKRDVKYIYNTY 629
           GL+   S   IFN   L A++LL+ N +K    K I+N +
Sbjct: 12  GLFRKCSFRRIFNFAFLGASILLLYNFMKPNTSKAIFNAF 51


>AC006603-2|AAF39746.2|  507|Caenorhabditis elegans Hypothetical
           protein B0524.3 protein.
          Length = 507

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = +1

Query: 124 IKSGACAFSKALVALQKPSWQVNSLAALEITQ 219
           +K  A    KAL +L+K SWQV+SL  L   Q
Sbjct: 192 VKGQAHRLEKALASLEKVSWQVSSLLGLPAIQ 223


>U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog
           (drosophila nompa:no mechanoreceptor potential a)
           protein 1, isoform b protein.
          Length = 1069

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -3

Query: 299 FTFQHNRGVDCSLNRLPCVTDQQCRDNCVISSAASELTCQDGFC 168
           F  QHN  V   +  +P     +C D+C  S     +  +DG C
Sbjct: 33  FVLQHNTTVGARIRTIPTSNLAECSDHCSASLDCQGVEFKDGSC 76


>U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog
           (drosophila nompa:no mechanoreceptor potential a)
           protein 1, isoform a protein.
          Length = 1065

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -3

Query: 299 FTFQHNRGVDCSLNRLPCVTDQQCRDNCVISSAASELTCQDGFC 168
           F  QHN  V   +  +P     +C D+C  S     +  +DG C
Sbjct: 33  FVLQHNTTVGARIRTIPTSNLAECSDHCSASLDCQGVEFKDGSC 76


>AF039041-5|AAB94187.1|  128|Caenorhabditis elegans Hypothetical
           protein W03F8.6a protein.
          Length = 128

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
 Frame = -3

Query: 302 NFTFQHNRGVDCSLNRLPCVTDQQC-RDNCVISSAASELTCQDGFCNATNALLNAQAPDL 126
           ++  +H +G D       C    +C  D C+         C D  CN++N L+   A  L
Sbjct: 60  SYVRRHKKGDDSYTITKSCGEVGKCFEDGCIGPGDEKNCCCSDNMCNSSNGLIYPTAGIL 119

Query: 125 I 123
           I
Sbjct: 120 I 120


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,332,742
Number of Sequences: 27780
Number of extensions: 374901
Number of successful extensions: 919
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)