Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25c15
(645 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC009296-1|AAH09296.1| 360|Homo sapiens mitochondrial ribosomal... 118 2e-26
AK075436-1|BAC11619.1| 218|Homo sapiens protein ( Homo sapiens ... 118 2e-26
AF321613-1|AAK01406.1| 360|Homo sapiens GIBT protein protein. 118 2e-26
AF226045-1|AAF86945.1| 360|Homo sapiens GK002 protein. 118 2e-26
AF063603-1|AAG43162.1| 168|Homo sapiens brain my045 protein pro... 77 7e-14
AB208981-1|BAD92218.1| 195|Homo sapiens mitochondrial ribosomal... 38 0.023
>BC009296-1|AAH09296.1| 360|Homo sapiens mitochondrial ribosomal
protein S22 protein.
Length = 360
Score = 118 bits (283), Expect = 2e-26
Identities = 61/150 (40%), Positives = 91/150 (60%)
Frame = +2
Query: 194 PKFFTPNVQNLLKRLTRPDFTKVFRKRNNQGLHALKTPKYKFLTKEELELEIAKANEKAD 373
P F VQ++L ++T + K F+ + LK P YK +T+ +LE +A E A
Sbjct: 68 PTFMDEEVQSILTKMTGLNLQKTFKP----AIQELKPPTYKLMTQAQLEEATRQAVEAAK 123
Query: 374 VLLQIPPVLKIHKPIDEVLSRDPALIGYDTSKYLFTDITFGIANEERIIIERDTDGTLRS 553
V L++PPVL+ PI++VL+ D L G +T+KY+FTDI++ I + ER I+ R+ GTLR
Sbjct: 124 VRLKMPPVLEERVPINDVLAEDKILEGTETTKYVFTDISYSIPHRERFIVVREPSGTLRK 183
Query: 554 CDHDIRKKLNQVYFPITGRKIREPHMFSDE 643
+ R ++ QVYFP GRKI P +F +E
Sbjct: 184 ASWEERDRMIQVYFPKEGRKILTPIIFKEE 213
>AK075436-1|BAC11619.1| 218|Homo sapiens protein ( Homo sapiens
cDNA PSEC0127 fis, clone PLACE1003724, highly similar to
Mitochondrial 28S ribosomal protein S22. ).
Length = 218
Score = 118 bits (283), Expect = 2e-26
Identities = 61/150 (40%), Positives = 91/150 (60%)
Frame = +2
Query: 194 PKFFTPNVQNLLKRLTRPDFTKVFRKRNNQGLHALKTPKYKFLTKEELELEIAKANEKAD 373
P F VQ++L ++T + K F+ + LK P YK +T+ +LE +A E A
Sbjct: 68 PTFMDEEVQSILTKMTGLNLQKTFKP----AIQELKPPTYKLMTQAQLEEATRQAVEAAK 123
Query: 374 VLLQIPPVLKIHKPIDEVLSRDPALIGYDTSKYLFTDITFGIANEERIIIERDTDGTLRS 553
V L++PPVL+ PI++VL+ D L G +T+KY+FTDI++ I + ER I+ R+ GTLR
Sbjct: 124 VRLKMPPVLEERVPINDVLAEDKILEGTETTKYVFTDISYSIPHRERFIVVREPSGTLRK 183
Query: 554 CDHDIRKKLNQVYFPITGRKIREPHMFSDE 643
+ R ++ QVYFP GRKI P +F +E
Sbjct: 184 ASWEERDRMIQVYFPKEGRKILTPIIFKEE 213
>AF321613-1|AAK01406.1| 360|Homo sapiens GIBT protein protein.
Length = 360
Score = 118 bits (283), Expect = 2e-26
Identities = 61/150 (40%), Positives = 91/150 (60%)
Frame = +2
Query: 194 PKFFTPNVQNLLKRLTRPDFTKVFRKRNNQGLHALKTPKYKFLTKEELELEIAKANEKAD 373
P F VQ++L ++T + K F+ + LK P YK +T+ +LE +A E A
Sbjct: 68 PTFMDEEVQSILTKMTGLNLQKTFKP----AIQELKPPTYKLMTQAQLEEATRQAVEAAK 123
Query: 374 VLLQIPPVLKIHKPIDEVLSRDPALIGYDTSKYLFTDITFGIANEERIIIERDTDGTLRS 553
V L++PPVL+ PI++VL+ D L G +T+KY+FTDI++ I + ER I+ R+ GTLR
Sbjct: 124 VRLKMPPVLEERVPINDVLAEDKILEGTETTKYVFTDISYSIPHRERFIVVREPSGTLRK 183
Query: 554 CDHDIRKKLNQVYFPITGRKIREPHMFSDE 643
+ R ++ QVYFP GRKI P +F +E
Sbjct: 184 ASWEERDRMIQVYFPKEGRKILTPIIFKEE 213
>AF226045-1|AAF86945.1| 360|Homo sapiens GK002 protein.
Length = 360
Score = 118 bits (283), Expect = 2e-26
Identities = 61/150 (40%), Positives = 91/150 (60%)
Frame = +2
Query: 194 PKFFTPNVQNLLKRLTRPDFTKVFRKRNNQGLHALKTPKYKFLTKEELELEIAKANEKAD 373
P F VQ++L ++T + K F+ + LK P YK +T+ +LE +A E A
Sbjct: 68 PTFMDEEVQSILTKMTGLNLQKTFKP----AIQELKPPTYKLMTQAQLEEATRQAVEAAK 123
Query: 374 VLLQIPPVLKIHKPIDEVLSRDPALIGYDTSKYLFTDITFGIANEERIIIERDTDGTLRS 553
V L++PPVL+ PI++VL+ D L G +T+KY+FTDI++ I + ER I+ R+ GTLR
Sbjct: 124 VRLKMPPVLEERVPINDVLAEDKILEGTETTKYVFTDISYSIPHRERFIVVREPSGTLRK 183
Query: 554 CDHDIRKKLNQVYFPITGRKIREPHMFSDE 643
+ R ++ QVYFP GRKI P +F +E
Sbjct: 184 ASWEERDRMIQVYFPKEGRKILTPIIFKEE 213
>AF063603-1|AAG43162.1| 168|Homo sapiens brain my045 protein
protein.
Length = 168
Score = 76.6 bits (180), Expect = 7e-14
Identities = 40/102 (39%), Positives = 62/102 (60%)
Frame = +2
Query: 194 PKFFTPNVQNLLKRLTRPDFTKVFRKRNNQGLHALKTPKYKFLTKEELELEIAKANEKAD 373
P F VQ++L ++T + K F+ + LK P YK +T+ +LE +A E A
Sbjct: 67 PTFMDEEVQSILTKMTGLNLQKTFKP----AIQELKPPTYKLMTQAQLEEATRQAVEAAK 122
Query: 374 VLLQIPPVLKIHKPIDEVLSRDPALIGYDTSKYLFTDITFGI 499
V L++PPVL+ PI++VL+ D L G +T+KY+FTDI++ I
Sbjct: 123 VRLKMPPVLEERVPINDVLAEDKILEGTETTKYVFTDISYSI 164
>AB208981-1|BAD92218.1| 195|Homo sapiens mitochondrial ribosomal
protein S22 variant protein.
Length = 195
Score = 38.3 bits (85), Expect = 0.023
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +2
Query: 524 ERDTDGTLRSCDHDIRKKLNQVYFPITGRKIREPHMFSDE 643
++ GTLR + R ++ QVYFP GRKI P +F +E
Sbjct: 9 QKQPSGTLRKASWEERDRMIQVYFPKEGRKILTPIIFKEE 48
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,160,606
Number of Sequences: 237096
Number of extensions: 1930952
Number of successful extensions: 3267
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3267
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7141427170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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