Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25c15
         (645 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   2.5  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   2.5  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   2.5  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    23   3.3  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    23   3.3  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   3.3  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   5.8  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              22   5.8  
AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.          22   5.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   7.7  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
 Frame = +2

Query: 158 VPSF-YDGEQDPAPKFFTPNVQNL 226
           +P F Y G   P P+F  PN   L
Sbjct: 153 IPRFRYIGPSTPFPRFIPPNAYRL 176


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
 Frame = +2

Query: 158 VPSF-YDGEQDPAPKFFTPNVQNL 226
           +P F Y G   P P+F  PN   L
Sbjct: 153 IPRFRYIGPSTPFPRFIPPNAYRL 176


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
 Frame = +2

Query: 158 VPSF-YDGEQDPAPKFFTPNV 217
           +P F Y G   P P+F  PNV
Sbjct: 364 IPRFRYIGPPTPFPRFIPPNV 384


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
 Frame = +2

Query: 158 VPSF-YDGEQDPAPKFFTPNVQNL 226
           +P F Y G   P P+F  PN   L
Sbjct: 150 IPRFRYIGPPTPFPRFIPPNAYRL 173


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
 Frame = +2

Query: 158 VPSF-YDGEQDPAPKFFTPNVQNL 226
           +P F Y G   P P+F  PN   L
Sbjct: 150 IPRFRYIGPPTPFPRFIPPNAYRL 173


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
 Frame = +2

Query: 158 VPSF-YDGEQDPAPKFFTPNVQNL 226
           +P F Y G   P P+F  PN   L
Sbjct: 378 IPRFRYIGPPTPFPRFIPPNAYRL 401


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 245 PDFTKVFRKRNNQGLHALKT 304
           PDFT    +R+N  ++A KT
Sbjct: 121 PDFTSDVTERDNHLVNAFKT 140


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 348 LLKLMKKPMCFFKYLLSSKFTN 413
           L+K+ K   CFFKY   ++  N
Sbjct: 113 LIKISKILECFFKYKTINQILN 134


>AY352277-2|AAQ67419.1|   88|Apis mellifera EX4.8-5.8 protein.
          Length = 88

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 476 FTDITFGIANEERIII 523
           FTDITFG+    ++ I
Sbjct: 43  FTDITFGVNKWSKVCI 58


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +3

Query: 297 LKLPNISFSRKKSLNWKLLKLMKKPMCFFKYLLSSKF 407
           L+LP    S  + L    LK M +P  FFK   S  F
Sbjct: 97  LRLPENMTSEYRLLEVDWLKNMWRPDSFFKNAKSVTF 133


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,513
Number of Sequences: 438
Number of extensions: 4096
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)