Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25c13
(491 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical pr... 66 1e-11
U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin prote... 66 1e-11
U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin prote... 66 1e-11
M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin p... 66 1e-11
L31492-1|AAC37252.1| 128|Caenorhabditis elegans ubiquitin/ribos... 66 1e-11
M21321-1|AAA28153.1| 37|Caenorhabditis elegans protein ( C.ele... 57 8e-09
Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical pr... 49 2e-06
AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical ... 47 9e-06
L16530-1|AAA28161.1| 163|Caenorhabditis elegans ubiquitin-like:... 38 0.005
AC006651-5|AAM48542.1| 47|Caenorhabditis elegans Ubiquitin-lik... 38 0.005
AC006651-4|AAF39865.1| 163|Caenorhabditis elegans Ubiquitin-lik... 38 0.005
U68251-1|AAB16966.1| 69|Caenorhabditis elegans rab1-like protein. 32 0.20
AF101310-3|AAC69218.1| 205|Caenorhabditis elegans Rab family pr... 32 0.20
U68250-1|AAB16965.1| 66|Caenorhabditis elegans rab1-like protein. 31 0.34
AL117202-19|CAB57899.1| 209|Caenorhabditis elegans Hypothetical... 31 0.34
Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical pr... 31 0.60
L19639-1|AAC37168.1| 253|Caenorhabditis elegans homeobox protei... 30 1.0
L19248-1|AAB04137.1| 253|Caenorhabditis elegans homeobox protei... 30 1.0
AC006605-9|AAK85445.1| 253|Caenorhabditis elegans Abnormal cell... 30 1.0
Z92834-5|CAB07390.1| 402|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z83104-3|CAB05476.1| 295|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z81589-9|CAJ85769.1| 926|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z81589-8|CAB04720.1| 923|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z81499-2|CAB04088.1| 598|Caenorhabditis elegans Hypothetical pr... 28 4.2
Z69904-3|CAA93780.1| 372|Caenorhabditis elegans Hypothetical pr... 28 4.2
U41995-11|AAA83467.1| 665|Caenorhabditis elegans Hypothetical p... 28 4.2
U09415-1|AAA82164.1| 655|Caenorhabditis elegans Ceprp21 protein. 28 4.2
AY494976-1|AAR87493.1| 598|Caenorhabditis elegans UNC-122 protein. 28 4.2
AF106576-5|AAC78179.1| 655|Caenorhabditis elegans Yeast prp (sp... 28 4.2
Z81553-3|CAB04493.1| 136|Caenorhabditis elegans Hypothetical pr... 27 5.6
U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical p... 27 5.6
AC006769-8|AAF60581.1| 431|Caenorhabditis elegans Hypothetical ... 27 5.6
AC006645-1|AAF39843.1| 418|Caenorhabditis elegans Hypothetical ... 27 5.6
Z72510-1|CAA96651.1| 572|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 27 9.8
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 27 9.8
AF040645-9|AAB94972.2| 197|Caenorhabditis elegans Hypothetical ... 27 9.8
>Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical
protein ZK1010.1 protein.
Length = 128
Score = 66.1 bits (154), Expect = 1e-11
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = -2
Query: 130 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRL 2
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRL
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRL 43
>U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin protein
1, isoform c protein.
Length = 538
Score = 66.1 bits (154), Expect = 1e-11
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = -2
Query: 130 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRL 2
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRL
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRL 43
Score = 66.1 bits (154), Expect = 1e-11
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = -2
Query: 130 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRL 2
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRL
Sbjct: 77 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRL 119
Score = 66.1 bits (154), Expect = 1e-11
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = -2
Query: 130 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRL 2
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRL
Sbjct: 153 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRL 195
Score = 66.1 bits (154), Expect = 1e-11
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = -2
Query: 130 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRL 2
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRL
Sbjct: 229 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRL 271
Score = 66.1 bits (154), Expect = 1e-11
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = -2
Query: 130 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRL 2
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRL
Sbjct: 305 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRL 347
Score = 66.1 bits (154), Expect = 1e-11
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = -2
Query: 130 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRL 2
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRL
Sbjct: 457 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRL 499
Score = 63.7 bits (148), Expect = 7e-11
Identities = 28/43 (65%), Positives = 35/43 (81%)
Frame = -2
Query: 130 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRL 2
MQIF+KTL GKTIT E E ++T+ ++K KI DKEG+P DQQRL
Sbjct: 381 MQIFVKTLIGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRL 423
>U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin protein
1, isoform a protein.
Length = 838
Score = 66.1 bits (154), Expect = 1e-11
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = -2
Query: 130 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRL 2
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRL
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRL 43
Score = 66.1 bits (154), Expect = 1e-11
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = -2
Query: 130 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRL 2
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRL
Sbjct: 77 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRL 119
Score = 66.1 bits (154), Expect = 1e-11
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = -2
Query: 130 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRL 2
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRL
Sbjct: 153 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRL 195
Score = 66.1 bits (154), Expect = 1e-11
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = -2
Query: 130 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRL 2
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRL
Sbjct: 229 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRL 271
Score = 66.1 bits (154), Expect = 1e-11
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = -2
Query: 130 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRL 2
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRL
Sbjct: 305 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRL 347
Score = 66.1 bits (154), Expect = 1e-11
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = -2
Query: 130 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRL 2
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRL
Sbjct: 457 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRL 499
Score = 66.1 bits (154), Expect = 1e-11
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = -2
Query: 130 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRL 2
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRL
Sbjct: 533 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRL 575
Score = 66.1 bits (154), Expect = 1e-11
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = -2
Query: 130 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRL 2
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRL
Sbjct: 609 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRL 651
Score = 66.1 bits (154), Expect = 1e-11
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = -2
Query: 130 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRL 2
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRL
Sbjct: 685 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRL 727
Score = 66.1 bits (154), Expect = 1e-11
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = -2
Query: 130 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRL 2
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRL
Sbjct: 761 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRL 803
Score = 63.7 bits (148), Expect = 7e-11
Identities = 28/43 (65%), Positives = 35/43 (81%)
Frame = -2
Query: 130 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRL 2
MQIF+KTL GKTIT E E ++T+ ++K KI DKEG+P DQQRL
Sbjct: 381 MQIFVKTLIGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRL 423
>M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin
protein.
Length = 838
Score = 66.1 bits (154), Expect = 1e-11
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = -2
Query: 130 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRL 2
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRL
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRL 43
Score = 66.1 bits (154), Expect = 1e-11
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = -2
Query: 130 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRL 2
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRL
Sbjct: 77 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRL 119
Score = 66.1 bits (154), Expect = 1e-11
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = -2
Query: 130 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRL 2
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRL
Sbjct: 153 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRL 195
Score = 66.1 bits (154), Expect = 1e-11
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = -2
Query: 130 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRL 2
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRL
Sbjct: 229 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRL 271
Score = 66.1 bits (154), Expect = 1e-11
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = -2
Query: 130 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRL 2
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRL
Sbjct: 305 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRL 347
Score = 66.1 bits (154), Expect = 1e-11
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = -2
Query: 130 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRL 2
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRL
Sbjct: 381 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRL 423
Score = 66.1 bits (154), Expect = 1e-11
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = -2
Query: 130 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRL 2
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRL
Sbjct: 457 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRL 499
Score = 66.1 bits (154), Expect = 1e-11
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = -2
Query: 130 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRL 2
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRL
Sbjct: 533 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRL 575
Score = 66.1 bits (154), Expect = 1e-11
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = -2
Query: 130 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRL 2
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRL
Sbjct: 609 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRL 651
Score = 66.1 bits (154), Expect = 1e-11
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = -2
Query: 130 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRL 2
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRL
Sbjct: 685 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRL 727
Score = 66.1 bits (154), Expect = 1e-11
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = -2
Query: 130 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRL 2
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRL
Sbjct: 761 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRL 803
>L31492-1|AAC37252.1| 128|Caenorhabditis elegans
ubiquitin/ribosomal fusion protein protein.
Length = 128
Score = 66.1 bits (154), Expect = 1e-11
Identities = 29/43 (67%), Positives = 36/43 (83%)
Frame = -2
Query: 130 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRL 2
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRL
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRL 43
>M21321-1|AAA28153.1| 37|Caenorhabditis elegans protein (
C.elegans ubiquitin A(UbiA) gene, 5' end. ).
Length = 37
Score = 56.8 bits (131), Expect = 8e-09
Identities = 24/37 (64%), Positives = 31/37 (83%)
Frame = -2
Query: 130 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVP 20
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP 37
>Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical
protein F45H11.2 protein.
Length = 77
Score = 48.8 bits (111), Expect = 2e-06
Identities = 22/43 (51%), Positives = 30/43 (69%)
Frame = -2
Query: 130 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRL 2
M I +KTLTGK I + EP + V +K+K+ +KEG+P QQRL
Sbjct: 1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRL 43
>AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical
protein F52C6.4 protein.
Length = 292
Score = 46.8 bits (106), Expect = 9e-06
Identities = 22/44 (50%), Positives = 29/44 (65%)
Frame = -2
Query: 133 KMQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRL 2
K+ + +KTL GKTI + +TV LK K+ +K GVP DQQRL
Sbjct: 160 KLTVSVKTLFGKTIPISIKNTDTVETLKFKVQNKHGVPPDQQRL 203
Score = 30.7 bits (66), Expect = 0.60
Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = -2
Query: 178 RAHSQQPLSFIS-NSVKMQIFIKTLTGKTITAETEPAETVADLKQKIADKEGV 23
R S+ P IS +S M + +KT TGKTIT E ++K ++ DK+GV
Sbjct: 42 RISSKLPEDQISVDSKTMLLSVKTSTGKTITVEAP-----KNVKTEVRDKQGV 89
>L16530-1|AAA28161.1| 163|Caenorhabditis elegans
ubiquitin-like:ribosomal proteinfusion protein protein.
Length = 163
Score = 37.5 bits (83), Expect = 0.005
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = -2
Query: 124 IFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRL 2
+F+KTL +T+ E E V +KQKI EG+P ++QRL
Sbjct: 2 VFVKTLH-RTLFLEVAANEDVLSIKQKIEAAEGIPAEEQRL 41
>AC006651-5|AAM48542.1| 47|Caenorhabditis elegans Ubiquitin-like
family protein 1,isoform b protein.
Length = 47
Score = 37.5 bits (83), Expect = 0.005
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = -2
Query: 124 IFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRL 2
+F+KTL +T+ E E V +KQKI EG+P ++QRL
Sbjct: 2 VFVKTLH-RTLFLEVAANEDVLSIKQKIEAAEGIPAEEQRL 41
>AC006651-4|AAF39865.1| 163|Caenorhabditis elegans Ubiquitin-like
family protein 1,isoform a protein.
Length = 163
Score = 37.5 bits (83), Expect = 0.005
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = -2
Query: 124 IFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRL 2
+F+KTL +T+ E E V +KQKI EG+P ++QRL
Sbjct: 2 VFVKTLH-RTLFLEVAANEDVLSIKQKIEAAEGIPAEEQRL 41
>U68251-1|AAB16966.1| 69|Caenorhabditis elegans rab1-like protein.
Length = 69
Score = 32.3 bits (70), Expect = 0.20
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +3
Query: 129 IFTLLLINDNGCCECALASTDGGIVQQAADTHTTNYFPSTAIDFHARNQKLSGR 290
+F LLLI D+G + L +++ A DT+T +Y + +DF R +L G+
Sbjct: 11 LFKLLLIGDSGVGKSCL------LLRFADDTYTESYISTIGVDFKIRTIELDGK 58
>AF101310-3|AAC69218.1| 205|Caenorhabditis elegans Rab family
protein 1 protein.
Length = 205
Score = 32.3 bits (70), Expect = 0.20
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +3
Query: 129 IFTLLLINDNGCCECALASTDGGIVQQAADTHTTNYFPSTAIDFHARNQKLSGR 290
+F LLLI D+G + L +++ A DT+T +Y + +DF R +L G+
Sbjct: 11 LFKLLLIGDSGVGKSCL------LLRFADDTYTESYISTIGVDFKIRTIELDGK 58
>U68250-1|AAB16965.1| 66|Caenorhabditis elegans rab1-like protein.
Length = 66
Score = 31.5 bits (68), Expect = 0.34
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = +3
Query: 129 IFTLLLINDNGCCECALASTDGGIVQQAADTHTTNYFPSTAIDFHARNQKLSGRRAR 299
+F LL+I D+G + +L +++ A +T + NY + +DF R ++G+R +
Sbjct: 10 LFKLLIIGDSGVGKSSL------LLRFADNTFSENYITTIGVDFKIRTMDINGQRVK 60
>AL117202-19|CAB57899.1| 209|Caenorhabditis elegans Hypothetical
protein Y47D3A.25 protein.
Length = 209
Score = 31.5 bits (68), Expect = 0.34
Identities = 16/57 (28%), Positives = 32/57 (56%)
Frame = +3
Query: 129 IFTLLLINDNGCCECALASTDGGIVQQAADTHTTNYFPSTAIDFHARNQKLSGRRAR 299
+F LL+I D+G + +L +++ A +T + NY + +DF R ++G+R +
Sbjct: 10 LFKLLIIGDSGVGKSSL------LLRFADNTFSENYITTIGVDFKIRTMDINGQRVK 60
>Z84574-5|CAB06541.1| 846|Caenorhabditis elegans Hypothetical
protein F33E2.6 protein.
Length = 846
Score = 30.7 bits (66), Expect = 0.60
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = -2
Query: 202 TIPPSVEARAHSQQPLSFISNS-VKMQIFIKTLTGKTITAETEPAETVADLKQKIADKEG 26
T+PP EA ++ P++ S + V M + +T T+T++TEP +T + ++I +
Sbjct: 723 TVPPKTEA-PRTEVPMTGPSRTEVPMTVTPETGLSSTVTSKTEPPKTTTE--KRITPRTE 779
Query: 25 VP 20
VP
Sbjct: 780 VP 781
>L19639-1|AAC37168.1| 253|Caenorhabditis elegans homeobox protein
protein.
Length = 253
Score = 29.9 bits (64), Expect = 1.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 261 GNQLPLKGNNSWCGYRPPVAQFHHRWR 181
G Q P+ G+ S C Y P V HH W+
Sbjct: 91 GPQYPILGDQSLC-YNPSVTSTHHDWK 116
>L19248-1|AAB04137.1| 253|Caenorhabditis elegans homeobox protein
protein.
Length = 253
Score = 29.9 bits (64), Expect = 1.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 261 GNQLPLKGNNSWCGYRPPVAQFHHRWR 181
G Q P+ G+ S C Y P V HH W+
Sbjct: 91 GPQYPILGDQSLC-YNPSVTSTHHDWK 116
>AC006605-9|AAK85445.1| 253|Caenorhabditis elegans Abnormal cell
lineage protein 39 protein.
Length = 253
Score = 29.9 bits (64), Expect = 1.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 261 GNQLPLKGNNSWCGYRPPVAQFHHRWR 181
G Q P+ G+ S C Y P V HH W+
Sbjct: 91 GPQYPILGDQSLC-YNPSVTSTHHDWK 116
>Z92834-5|CAB07390.1| 402|Caenorhabditis elegans Hypothetical
protein F39B2.10 protein.
Length = 402
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 118 IKTLTGKTITAETEPAETVADLKQKIADKEGVPV 17
I TL G+TI P E +A K+ EG+P+
Sbjct: 279 ISTLDGRTIFYRVLPGEVIAHADVKVIHNEGMPM 312
>Z83104-3|CAB05476.1| 295|Caenorhabditis elegans Hypothetical
protein F09B12.2 protein.
Length = 295
Score = 27.9 bits (59), Expect = 4.2
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -3
Query: 408 VSFYNFWQQSALLPHCIDHLAQVARCYIKSFESIYRFLHVGLIIFDY 268
+ F N WQ ++PH +I + SIY+FLHV L +F +
Sbjct: 178 IGFGNIWQ--VVIPHL---------AWIAGYISIYQFLHVLLFVFTF 213
>Z81589-9|CAJ85769.1| 926|Caenorhabditis elegans Hypothetical
protein T08G5.5b protein.
Length = 926
Score = 27.9 bits (59), Expect = 4.2
Identities = 23/73 (31%), Positives = 35/73 (47%)
Frame = -3
Query: 468 IQIFDSFAAEIARLIHFKIVVSFYNFWQQSALLPHCIDHLAQVARCYIKSFESIYRFLHV 289
+QIF S E+AR ++ K VV F AL+P+ ++H+ I +E + H
Sbjct: 584 VQIFTSDETEMARNLNRKAVVEFLKSECPDALIPY-LEHV-------IFKWEEPSSYFHE 635
Query: 288 GLIIFDYGRGNQL 250
L+ F R N L
Sbjct: 636 TLLEFYVARVNTL 648
>Z81589-8|CAB04720.1| 923|Caenorhabditis elegans Hypothetical
protein T08G5.5a protein.
Length = 923
Score = 27.9 bits (59), Expect = 4.2
Identities = 23/73 (31%), Positives = 35/73 (47%)
Frame = -3
Query: 468 IQIFDSFAAEIARLIHFKIVVSFYNFWQQSALLPHCIDHLAQVARCYIKSFESIYRFLHV 289
+QIF S E+AR ++ K VV F AL+P+ ++H+ I +E + H
Sbjct: 584 VQIFTSDETEMARNLNRKAVVEFLKSECPDALIPY-LEHV-------IFKWEEPSSYFHE 635
Query: 288 GLIIFDYGRGNQL 250
L+ F R N L
Sbjct: 636 TLLEFYVARVNTL 648
>Z81499-2|CAB04088.1| 598|Caenorhabditis elegans Hypothetical
protein F11C3.2 protein.
Length = 598
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 169 NVPLPPPMVELCNRRPIPTPRIISLQRQLISTPVIKNYQADVQEAI 306
N P P V+ R PIP P +I ++ +++ PV+ + +V + +
Sbjct: 162 NCPFPDLYVQ---RVPIPGPPVIKIEEKMVPVPVVVVKEIEVTKFV 204
>Z69904-3|CAA93780.1| 372|Caenorhabditis elegans Hypothetical
protein ZK20.3 protein.
Length = 372
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -2
Query: 154 SFISNSVK-MQIFIKTLTGKTITAETEPAETVADLKQKIADKEG 26
SFI+N + + + +TLT E +T+A++K +A ++G
Sbjct: 43 SFINNQMMVLSVTFRTLTQVNFNLELNEDQTIAEVKALVASEKG 86
>U41995-11|AAA83467.1| 665|Caenorhabditis elegans Hypothetical
protein E02C12.10 protein.
Length = 665
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -3
Query: 441 EIARLIHFKIVVSFYNFWQQSALLPHCIDHLAQV 340
+I+ L+ FK+V++ + WQ + L HC+D +
Sbjct: 256 KISELLGFKLVLNHGDLWQSNML--HCLDEFGNL 287
>U09415-1|AAA82164.1| 655|Caenorhabditis elegans Ceprp21 protein.
Length = 655
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -2
Query: 109 LTGKTITAETEPAETVADLKQKIADKEGVPVDQQRL 2
+ G + + +++LKQ+I D+ G+PV +Q+L
Sbjct: 584 MDGSIVQFTIQVTAPMSELKQQIQDRYGMPVGKQKL 619
>AY494976-1|AAR87493.1| 598|Caenorhabditis elegans UNC-122 protein.
Length = 598
Score = 27.9 bits (59), Expect = 4.2
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 169 NVPLPPPMVELCNRRPIPTPRIISLQRQLISTPVIKNYQADVQEAI 306
N P P V+ R PIP P +I ++ +++ PV+ + +V + +
Sbjct: 162 NCPFPDLYVQ---RVPIPGPPVIKIEEKMVPVPVVVVKEIEVTKFV 204
>AF106576-5|AAC78179.1| 655|Caenorhabditis elegans Yeast prp
(splicing factor) relatedprotein 21 protein.
Length = 655
Score = 27.9 bits (59), Expect = 4.2
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = -2
Query: 109 LTGKTITAETEPAETVADLKQKIADKEGVPVDQQRL 2
+ G + + +++LKQ+I D+ G+PV +Q+L
Sbjct: 584 MDGSIVQFTIQVTAPMSELKQQIQDRYGMPVGKQKL 619
>Z81553-3|CAB04493.1| 136|Caenorhabditis elegans Hypothetical
protein F56H6.3 protein.
Length = 136
Score = 27.5 bits (58), Expect = 5.6
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = -3
Query: 477 FQKIQIFDSFAAEIARLIHFKIVVSFYNFWQQSALLPHCIDHLAQVARCYIKSFE 313
F KIQ F SF + + HFKI++ + F SA +P + L + + +F+
Sbjct: 11 FWKIQFFRSFISAFLEISHFKILL--FRF---SAFVPFSVVKLPVFCQIFSHNFQ 60
>U32305-18|AAK18852.2| 719|Caenorhabditis elegans Hypothetical
protein B0336.3 protein.
Length = 719
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +1
Query: 211 RPIPTPRIISLQRQLISTPVIKNYQADVQEAIDAFKRLNITPGHLGEVIDAMGQQGRLL 387
+P+ P+I ++Q + +NY+ +Q DA +RL L ++ A Q +L
Sbjct: 460 KPVEKPKIATVQESKFVSVAAQNYRKQIQ---DAKERLTKEKSILSTLVQAQNQHNIIL 515
>AC006769-8|AAF60581.1| 431|Caenorhabditis elegans Hypothetical
protein Y45G12C.4 protein.
Length = 431
Score = 27.5 bits (58), Expect = 5.6
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = -3
Query: 444 AEIARLIHFKIVVSFYNFWQQSALLPHCID 355
++++ L+ FK+V++ + WQ + L HC+D
Sbjct: 269 SKVSELLGFKLVLNHGDLWQSNML--HCLD 296
>AC006645-1|AAF39843.1| 418|Caenorhabditis elegans Hypothetical
protein F56A4.5 protein.
Length = 418
Score = 27.5 bits (58), Expect = 5.6
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = -3
Query: 444 AEIARLIHFKIVVSFYNFWQQSALLPHCID 355
++++ L+ FK+V++ + WQ + L HC+D
Sbjct: 256 SKVSELLGFKLVLNHGDLWQSNML--HCLD 283
>Z72510-1|CAA96651.1| 572|Caenorhabditis elegans Hypothetical
protein F53B7.2 protein.
Length = 572
Score = 27.1 bits (57), Expect = 7.4
Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Frame = -2
Query: 199 IPPSVEARAHSQQPLSFISNSVKM----QIFIKT-----LTGKTITAETE-PAETVADLK 50
+P VEAR H ++ F+ N +M Q+F+ T +TI E E E +++
Sbjct: 484 LPDEVEARRHRKEKSHFVKNKKQMNKSAQLFLTTSEIDLRKARTIRKEQEDEEEEEEEIR 543
Query: 49 QKIADKEGVPVDQQR 5
+ +D+ DQ R
Sbjct: 544 EIQSDEPSAANDQNR 558
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 115 KTLTGKTITAETEPAETVADLKQKIADKEGVP 20
+ L G + A T+P + V D +++ KEGVP
Sbjct: 812 QVLPGDPLEAGTKPNQIVLDTRKRKGLKEGVP 843
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 26.6 bits (56), Expect = 9.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 115 KTLTGKTITAETEPAETVADLKQKIADKEGVP 20
+ L G + A T+P + V D +++ KEGVP
Sbjct: 812 QVLPGDPLEAGTKPNQIVLDTRKRKGLKEGVP 843
>AF040645-9|AAB94972.2| 197|Caenorhabditis elegans Hypothetical
protein F52C6.3 protein.
Length = 197
Score = 26.6 bits (56), Expect = 9.8
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -2
Query: 130 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGV 23
M + IKT TGK IT E + +K ++ DK+GV
Sbjct: 1 MLLSIKTSTGKNITVEAPKS-----VKTEVRDKQGV 31
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,806,853
Number of Sequences: 27780
Number of extensions: 259547
Number of successful extensions: 812
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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