Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25c07
(227 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 28 0.19
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 27 0.33
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 27 0.44
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 0.44
SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyce... 26 0.58
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 26 0.77
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 25 1.0
SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomy... 25 1.0
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 1.3
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa... 25 1.8
SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces pom... 25 1.8
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 24 2.4
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 24 3.1
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 24 3.1
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 24 3.1
SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces po... 23 4.1
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po... 23 4.1
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 23 5.4
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 23 5.4
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 23 5.4
SPCC191.08 |||DUF1715 family protein|Schizosaccharomyces pombe|c... 23 5.4
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 23 7.2
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 23 7.2
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 23 7.2
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 23 7.2
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po... 22 9.5
SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase ... 22 9.5
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 22 9.5
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 22 9.5
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 27.9 bits (59), Expect = 0.19
Identities = 15/51 (29%), Positives = 29/51 (56%)
Frame = -2
Query: 154 DLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMKSRQNFL 2
+LK++L IN +K + + +++KSLTKN E++ R + R ++
Sbjct: 638 ELKAQLNAINTLIKKAELVADQ-KQLKSLTKNHQEIEKAIHRKERQRDQYM 687
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 27.1 bits (57), Expect = 0.33
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = -2
Query: 148 KSKLEEINRHKQ---KITIDSQHFEKIKSLTKNVNELQNMEKRVMKSRQN 8
++KLEE + K+ + +++ K+ L VNEL+ +EK + KS ++
Sbjct: 839 RTKLEETSFKKKIDDAVLANNEQKLKLTKLNFQVNELEQLEKDINKSSED 888
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 26.6 bits (56), Expect = 0.44
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Frame = -2
Query: 169 SQSQRDL----KSKLEEINRHKQKITIDSQHFE----KIKSLTKNVNELQNMEKRV 26
S+ RDL +S L + +K+K+++ S + K+ SLTK VNEL +V
Sbjct: 1195 SKKHRDLTFNHESLLRQSASYKEKLSLASSENKDLSNKVSSLTKQVNELSPKASKV 1250
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.6 bits (56), Expect = 0.44
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = -2
Query: 154 DLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMK 20
DL+SKL ++ + + + S K SL N+L+ +EK V K
Sbjct: 1043 DLQSKLSVVSSEYENLLLISSQTNK--SLEDKTNQLKYIEKNVQK 1085
>SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 335
Score = 26.2 bits (55), Expect = 0.58
Identities = 12/58 (20%), Positives = 29/58 (50%)
Frame = -2
Query: 214 SSVYFFKMFSKNYNASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQN 41
+ + F K F++N ++ R ++ + H+Q++ + E+ L+ + +LQN
Sbjct: 103 TEIEFVKAFNENRIKFKAIRAMEDSIAPSRAHRQRLISSIEREEERDPLSPKLTDLQN 160
>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 407
Score = 25.8 bits (54), Expect = 0.77
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = -2
Query: 157 RDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRV 26
R K KLEEIN K KI + + S TKN+ +++ K++
Sbjct: 7 RSQKRKLEEINNQK-KIKTKKKATGQQTSNTKNLRDVKKKGKQL 49
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 25.4 bits (53), Expect = 1.0
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 118 KQKITIDSQHFEKIKSLTKNVNELQNMEKRVMKSRQNF 5
K K ID + + K+ K ++ MEK + K R+NF
Sbjct: 422 KIKKPIDMEEYSKVSG--KVFRPVEEMEKELQKIRENF 457
>SPBC1921.03c |mex67||mRNA export receptor Mex67|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 596
Score = 25.4 bits (53), Expect = 1.0
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = -2
Query: 199 FKMFSKNYNASQSQRDLKSKLEEINRHKQ 113
+KM S+N SQSQ++ KS+L N H++
Sbjct: 393 YKMKSRNLLYSQSQKESKSRL--FNGHEE 419
>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.0 bits (52), Expect = 1.3
Identities = 16/65 (24%), Positives = 32/65 (49%)
Frame = -2
Query: 211 SVYFFKMFSKNYNASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEK 32
S++ F F ++ + + + ++S + + +IT+DSQ KIK L + LQ +
Sbjct: 327 SLFRFPFF-RSISGKKKEEPMESGTDSLESSTAQITVDSQ--LKIKQLETQIATLQKQLE 383
Query: 31 RVMKS 17
+ S
Sbjct: 384 QFQTS 388
>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 738
Score = 24.6 bits (51), Expect = 1.8
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -2
Query: 166 QSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNE 50
Q DL+ + + + +++ D+Q EK SL KN+ E
Sbjct: 16 QRFHDLQVESQRTDEKLERLLSDAQPTEKFNSLIKNMAE 54
>SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 171
Score = 24.6 bits (51), Expect = 1.8
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +2
Query: 20 LHNSFFHILQLVYVFCETFNFFKMLA 97
+H S F + + FC N FKM++
Sbjct: 9 VHESAFSLTHKTFAFCNCNNRFKMMS 34
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 24.2 bits (50), Expect = 2.4
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Frame = -2
Query: 142 KLEEINRHKQKITIDSQHFEKIKSLTKNVNE-------LQNMEKRVMKSRQNFL 2
+ +++NR +I I H EK+K KN N LQ K++ K R N L
Sbjct: 443 RCDQLNR---EIDILQNHVEKLKMSLKNTNSDITGEDVLQQKLKQLAKDRGNLL 493
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 23.8 bits (49), Expect = 3.1
Identities = 8/27 (29%), Positives = 17/27 (62%)
Frame = -2
Query: 133 EINRHKQKITIDSQHFEKIKSLTKNVN 53
EI+ K+ + ++H E++++L N N
Sbjct: 60 EIDNQKRDLCTKTKHIEELQTLLSNAN 86
>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 23.8 bits (49), Expect = 3.1
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +2
Query: 62 FCETFNFFKMLAVNS-YFLFMSI 127
FC T FF L +N+ Y+LF I
Sbjct: 194 FCVTSGFFSYLFINALYYLFAII 216
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 23.8 bits (49), Expect = 3.1
Identities = 9/36 (25%), Positives = 21/36 (58%)
Frame = -2
Query: 148 KSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQN 41
+ +L N+ K++ + + + + S+ + +NELQN
Sbjct: 30 EDQLRRNNKSSNKLSQNEEDAKNMDSVVQKLNELQN 65
>SPAC343.15 |||tRNA isopentenyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 434
Score = 23.4 bits (48), Expect = 4.1
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -2
Query: 199 FKMFSKNYNASQSQRDLKSKLEEI-NRHKQKITIDSQHF 86
F F K Y+ + +RD ++EI ++ K I + H+
Sbjct: 65 FLNFDKEYSVPEFERDASRVIDEIHSQGKIPIVVGGTHY 103
>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 23.4 bits (48), Expect = 4.1
Identities = 8/37 (21%), Positives = 20/37 (54%)
Frame = +2
Query: 71 TFNFFKMLAVNSYFLFMSINFFQFRF*ISLRLRCVVI 181
+FN+ + + VNS+ L + F + + + C+++
Sbjct: 137 SFNYHERIVVNSHMLLFYLKPFVIALPVLIGVTCILL 173
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 23.0 bits (47), Expect = 5.4
Identities = 8/12 (66%), Positives = 11/12 (91%)
Frame = -2
Query: 61 NVNELQNMEKRV 26
N NEL+N+EKR+
Sbjct: 348 NANELKNIEKRI 359
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 23.0 bits (47), Expect = 5.4
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = -2
Query: 196 KMFSKNYNAS---QSQRDLKSKLEEINRHKQKITIDSQHFEKIKS 71
K+ S N N + + DL+SKL ++ K+ EKI++
Sbjct: 259 KLSSNNRNVEILKEEKNDLESKLYRFEEYRDKVATLELENEKIQT 303
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 23.0 bits (47), Expect = 5.4
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -2
Query: 157 RDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMKSRQNFL 2
+D ++ L E KI +DS E K + + N L N+E +K +FL
Sbjct: 244 QDQQNGLMESRSQSLKI-LDSNVNEMDKLIMERENALNNVETTNLKKYSSFL 294
>SPCC191.08 |||DUF1715 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 134
Score = 23.0 bits (47), Expect = 5.4
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = -2
Query: 139 LEEINRHKQKITIDSQHFEKIKSLTKNV---NELQNME 35
L+E N KI +H E++KSL +++ NEL+ +
Sbjct: 59 LKEENSQHPKIKKAHRHLEQLKSLLESLPTNNELEETD 96
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 22.6 bits (46), Expect = 7.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 145 SKLEEINRHKQKITIDSQHFEKIKSL 68
+KLEE+NR K ++I S H K L
Sbjct: 395 NKLEELNRLKSLLSI-SSHLPKTLQL 419
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +2
Query: 62 FCETFNFFKMLAVNSYFLFMSINFF 136
F F F L+V SYF+ + ++ F
Sbjct: 214 FFRIFKFIAGLSVASYFVLLGMSIF 238
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 22.6 bits (46), Expect = 7.2
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -2
Query: 169 SQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMKSRQNF 5
+Q Q L K +E+ + KITI + + S T V ELQ+ ++ + N+
Sbjct: 137 AQLQNLLSDKEKEVEK---KITIIKDLKDALASSTHQVLELQHTQQEKASLQTNY 188
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 22.6 bits (46), Expect = 7.2
Identities = 13/52 (25%), Positives = 25/52 (48%)
Frame = -2
Query: 166 QSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMKSRQ 11
Q DLK+ L++++ I + H E I+ + N ++NM ++ Q
Sbjct: 461 QKVGDLKTCLQDVDELVDIIGEEKGHGESIRDKSMNDYYVKNMVRKAQVLEQ 512
>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 481
Score = 22.2 bits (45), Expect = 9.5
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -2
Query: 100 DSQHFEK-IKSLTKNVNELQNMEKRV 26
D + FE+ IK T +NE N+E RV
Sbjct: 452 DFEDFEEGIKRFTSVINEHFNVESRV 477
>SPAC1071.05 |||S-adenosylmethionine-dependent methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 22.2 bits (45), Expect = 9.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -2
Query: 133 EINRHKQKITIDSQHFEKIKSLTKNV 56
E N QK+ D + IK+ T+NV
Sbjct: 286 EFNSRLQKLVDDPNSLKAIKTSTQNV 311
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 22.2 bits (45), Expect = 9.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -2
Query: 178 YNASQSQRDLKSKLEEINRHKQKITIDSQHFEK 80
YN RD ++ H ITID +HF+K
Sbjct: 242 YNLVSCSRDGSIIFWDMRTHG--ITIDGEHFQK 272
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 22.2 bits (45), Expect = 9.5
Identities = 11/52 (21%), Positives = 27/52 (51%)
Frame = -2
Query: 190 FSKNYNASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNME 35
F K N SQSQ+D S + + ++ ++++ + +++ + E +N +
Sbjct: 482 FGKLKNHSQSQKDYNSSTSLDSSEESEVDVENK--QNVRTKYDRIFERKNQD 531
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 786,062
Number of Sequences: 5004
Number of extensions: 11808
Number of successful extensions: 69
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 55
effective length of database: 2,087,258
effective search space used: 41745160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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