Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25c07
         (227 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   0.48 
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    23   0.63 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   1.9  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   2.5  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    19   5.9  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    19   5.9  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          19   5.9  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 0.48
 Identities = 13/56 (23%), Positives = 24/56 (42%)
 Frame = -2

Query: 196 KMFSKNYNASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKR 29
           ++ + N    +S     S   + NRH   + ID +    IKS   +  E+  + K+
Sbjct: 217 RLTNSNSIKHESDNSDYSHTTDENRHSSTLDIDHKMLTPIKSEPIDAYEMHQISKK 272


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 22.6 bits (46), Expect = 0.63
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = -2

Query: 118 KQKITIDSQHFEKIKSLTKNVNEL----QNMEKRVMKSRQNFL 2
           K+ I+  S H EK K L    NE+    +  E+R+   R+ +L
Sbjct: 2   KRNISSYSHHDEKFKQLRNEDNEIDLRSRTKEERLQHRREAWL 44


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 1.9
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 205 YFFKMFSKNYNASQSQRDLKSKLEEINRHKQKITIDSQHFEK 80
           YF K+ S   + +   R   + L++INR   ++  D Q  E+
Sbjct: 271 YFPKLDSLVASRTWPFRPSGTVLKDINRQVDELNFDIQDLER 312


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 20.6 bits (41), Expect = 2.5
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +2

Query: 35  FHILQLVYVFCETFNFFKMLAVNSYFLFMSINFF 136
           FH  +L+YV+ +  +++  L    Y L   + +F
Sbjct: 286 FHTQRLLYVYAQESDYYPDLNEWLYILSGCLYYF 319


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 19.4 bits (38), Expect = 5.9
 Identities = 7/24 (29%), Positives = 14/24 (58%)
 Frame = -2

Query: 181 NYNASQSQRDLKSKLEEINRHKQK 110
           N+N +Q++   KS  +  N+H  +
Sbjct: 426 NHNHNQARHSSKSDNQNNNQHNDQ 449


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 19.4 bits (38), Expect = 5.9
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -2

Query: 145 SKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQN 41
           S + +IN H+ K ++  +       L   VNE  N
Sbjct: 443 STMNKINNHEYKRSVSRESNSNQFILMTTVNEGNN 477


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 19.4 bits (38), Expect = 5.9
 Identities = 9/61 (14%), Positives = 26/61 (42%)
 Frame = -2

Query: 196 KMFSKNYNASQSQRDLKSKLEEINRHKQKITIDSQHFEKIKSLTKNVNELQNMEKRVMKS 17
           + F +  +      DL+ +     R+  + +       + K   +  ++L N+E++ ++ 
Sbjct: 222 RSFQRTSSCHSRYEDLRHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQLHNVEEKHLRE 281

Query: 16  R 14
           R
Sbjct: 282 R 282


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,040
Number of Sequences: 438
Number of extensions: 623
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 46
effective length of database: 126,195
effective search space used:  3659655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)