Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25c03
         (409 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    27   1.5  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    26   2.0  
SPBC13A2.03 |||phosphatidate cytidylyltransferase|Schizosaccharo...    26   2.6  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    25   4.5  
SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|c...    24   7.9  

>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = -1

Query: 184 VYKEMVKNTFMHWQQVITKKAVKFSKREIK 95
           V ++ VK++  H+Q++ITK +V+  K E K
Sbjct: 447 VKQQTVKSSHSHYQELITKFSVEKEKAEQK 476


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
 Frame = +3

Query: 42  YFQRLLASRLNDLKYLYS---------LISRFENFTAFLVMTCCQCIKVFFTISLY 182
           YFQ+  +  ++DLK L S         L + F N T+ L  T   C +  FT+S Y
Sbjct: 117 YFQKDFSQTVDDLKPLLSELGLNYEIELPNSFSNLTSLLSSTFQLCFQHEFTVSKY 172


>SPBC13A2.03 |||phosphatidate
           cytidylyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 439

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 221 SDKESGAGHLKKTGDMALLSSISPVRLIKEKSM 319
           SDKE+G   + +  D A   +  P RL K KS+
Sbjct: 12  SDKENGNVGVVQNKDSASSKTTEPARLTKHKSL 44


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 93  CKDTLSHLGDSPIIFGNTARDLILS 19
           C D +     +P++ G TAR+L LS
Sbjct: 282 CDDCIRRKKQAPLVTGTTARELNLS 306


>SPAC26F1.05 |mug106||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 115

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 57  LASRLNDLKYLYSLISRFENFTAFLVMTCCQCIKVFFTISLYT 185
           L  +L+ L+Y Y +++    F   +V   C C+  F   +L+T
Sbjct: 19  LLVQLSLLRYRYMVLAYNHKFDCIVVTIYCGCLFWFSNGALFT 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,641,517
Number of Sequences: 5004
Number of extensions: 30989
Number of successful extensions: 91
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)