Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25c03
         (409 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0369 + 7843364-7843631,7844994-7845053,7845659-7845741,784...    28   2.5  

>03_02_0369 +
           7843364-7843631,7844994-7845053,7845659-7845741,
           7845834-7845898,7845965-7845998,7846102-7846172,
           7850409-7850532,7851151-7851268,7851803-7851889,
           7851972-7852055,7852127-7852209,7852556-7852624
          Length = 381

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +2

Query: 194 YKQQDADIISDKESGAGHLKKTGDMALLSSISPVRLI 304
           Y Q DA+  SD+E+G    +  GD+  L+ +S +R+I
Sbjct: 233 YTQIDAEDGSDEEAGGSDFEANGDLQ-LAKVSEMRII 268


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,679,890
Number of Sequences: 37544
Number of extensions: 169090
Number of successful extensions: 365
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)