Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25c03
(409 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL353718-2|CAH74116.1| 1036|Homo sapiens glycine dehydrogenase (... 31 2.0
AL162411-3|CAH69992.1| 1036|Homo sapiens glycine dehydrogenase (... 31 2.0
M64590-1|AAA36463.1| 1020|Homo sapiens glycine decarboxylase pro... 30 2.6
M63635-1|AAA36478.1| 1020|Homo sapiens glycine decarboxylase pro... 30 2.6
D90239-1|BAA14286.1| 1020|Homo sapiens glycine decarboxylase pre... 30 2.6
BC111995-1|AAI11996.1| 1020|Homo sapiens glycine dehydrogenase (... 30 2.6
BC111993-1|AAI11994.1| 1020|Homo sapiens glycine dehydrogenase (... 30 2.6
AF209931-1|AAF22843.1| 450|Homo sapiens 7h3 protein protein. 29 6.0
BC121061-1|AAI21062.1| 783|Homo sapiens patched domain containi... 29 8.0
AK054858-1|BAB70816.1| 783|Homo sapiens protein ( Homo sapiens ... 29 8.0
>AL353718-2|CAH74116.1| 1036|Homo sapiens glycine dehydrogenase
(decarboxylating) protein.
Length = 1036
Score = 30.7 bits (66), Expect = 2.0
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +3
Query: 186 FYLTNSKMLTSSVTKKVEPDT*KKPVTWHSFLQYHPFV 299
F T L S T K+ + P+TW F HPFV
Sbjct: 565 FQATPIPRLLGSCTMKLNSSSELAPITWKEFANIHPFV 602
>AL162411-3|CAH69992.1| 1036|Homo sapiens glycine dehydrogenase
(decarboxylating) protein.
Length = 1036
Score = 30.7 bits (66), Expect = 2.0
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +3
Query: 186 FYLTNSKMLTSSVTKKVEPDT*KKPVTWHSFLQYHPFV 299
F T L S T K+ + P+TW F HPFV
Sbjct: 565 FQATPIPRLLGSCTMKLNSSSELAPITWKEFANIHPFV 602
>M64590-1|AAA36463.1| 1020|Homo sapiens glycine decarboxylase
protein.
Length = 1020
Score = 30.3 bits (65), Expect = 2.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 192 LTNSKMLTSSVTKKVEPDT*KKPVTWHSFLQYHPFV 299
L +S + S T K+ + P+TW F HPFV
Sbjct: 548 LVHSMIPLGSCTMKLNSSSELAPITWKEFANIHPFV 583
>M63635-1|AAA36478.1| 1020|Homo sapiens glycine decarboxylase
protein.
Length = 1020
Score = 30.3 bits (65), Expect = 2.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 192 LTNSKMLTSSVTKKVEPDT*KKPVTWHSFLQYHPFV 299
L +S + S T K+ + P+TW F HPFV
Sbjct: 548 LVHSMIPLGSCTMKLNSSSELAPITWKEFANIHPFV 583
>D90239-1|BAA14286.1| 1020|Homo sapiens glycine decarboxylase
precursor protein.
Length = 1020
Score = 30.3 bits (65), Expect = 2.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 192 LTNSKMLTSSVTKKVEPDT*KKPVTWHSFLQYHPFV 299
L +S + S T K+ + P+TW F HPFV
Sbjct: 548 LVHSMIPLGSCTMKLNSSSELAPITWKEFANIHPFV 583
>BC111995-1|AAI11996.1| 1020|Homo sapiens glycine dehydrogenase
(decarboxylating) protein.
Length = 1020
Score = 30.3 bits (65), Expect = 2.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 192 LTNSKMLTSSVTKKVEPDT*KKPVTWHSFLQYHPFV 299
L +S + S T K+ + P+TW F HPFV
Sbjct: 548 LVHSMIPLGSCTMKLNSSSELAPITWKEFANIHPFV 583
>BC111993-1|AAI11994.1| 1020|Homo sapiens glycine dehydrogenase
(decarboxylating) protein.
Length = 1020
Score = 30.3 bits (65), Expect = 2.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 192 LTNSKMLTSSVTKKVEPDT*KKPVTWHSFLQYHPFV 299
L +S + S T K+ + P+TW F HPFV
Sbjct: 548 LVHSMIPLGSCTMKLNSSSELAPITWKEFANIHPFV 583
>AF209931-1|AAF22843.1| 450|Homo sapiens 7h3 protein protein.
Length = 450
Score = 29.1 bits (62), Expect = 6.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -2
Query: 153 CTGNKSSPKKP*NFRSARLSCKDTLSHL 70
CT N S P P N + +RL+C SHL
Sbjct: 95 CTTNLSQPACPDNLQMSRLTCDPNDSHL 122
>BC121061-1|AAI21062.1| 783|Homo sapiens patched domain containing
1 protein.
Length = 783
Score = 28.7 bits (61), Expect = 8.0
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 13/93 (13%)
Frame = +3
Query: 42 YFQRLLASRLNDLKYLYSL---ISRFENFTAFLVMTCCQCIKVFF----TISLY------ 182
Y +L+ L YL + S F N A + C CI +FF +S Y
Sbjct: 263 YADSMLSFSLTTAMYLVTFGIGASPFTNIEAARIFCCNSCIAIFFNYLYVLSFYGSSLVF 322
Query: 183 TFYLTNSKMLTSSVTKKVEPDT*KKPVTWHSFL 281
T Y+ N+ + K +P+ ++ W+ FL
Sbjct: 323 TGYIENNYQHSIFCRKVPKPEALQEKPAWYRFL 355
>AK054858-1|BAB70816.1| 783|Homo sapiens protein ( Homo sapiens
cDNA FLJ30296 fis, clone BRACE2003110, weakly similar to
PATCHED PROTEIN HOMOLOG 1. ).
Length = 783
Score = 28.7 bits (61), Expect = 8.0
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 13/93 (13%)
Frame = +3
Query: 42 YFQRLLASRLNDLKYLYSL---ISRFENFTAFLVMTCCQCIKVFF----TISLY------ 182
Y +L+ L YL + S F N A + C CI +FF +S Y
Sbjct: 263 YADSMLSFSLTTAMYLVTFGIGASPFTNIEAARIFCCNSCIAIFFNYLYVLSFYGSSLVF 322
Query: 183 TFYLTNSKMLTSSVTKKVEPDT*KKPVTWHSFL 281
T Y+ N+ + K +P+ ++ W+ FL
Sbjct: 323 TGYIENNYQHSIFCRKVPKPEALQEKPAWYRFL 355
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,594,552
Number of Sequences: 237096
Number of extensions: 954629
Number of successful extensions: 1476
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1476
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 3043111070
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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