Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25c03
         (409 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29535-8|AAK31452.2|  175|Caenorhabditis elegans Hypothetical pr...    31   0.32 
U29535-7|AAM81113.1|  275|Caenorhabditis elegans Hypothetical pr...    31   0.32 
Z99709-1|CAB16858.1|  488|Caenorhabditis elegans Hypothetical pr...    29   1.3  
U55370-1|AAA97993.3|  313|Caenorhabditis elegans Serpentine rece...    27   3.9  
AF106579-8|AAC78201.1|  710|Caenorhabditis elegans Hypothetical ...    26   9.1  

>U29535-8|AAK31452.2|  175|Caenorhabditis elegans Hypothetical
           protein C25H3.7a protein.
          Length = 175

 Score = 31.1 bits (67), Expect = 0.32
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +2

Query: 128 FGDDLLPVHKSVFYHL-LVHFLPYKQQDADIISD 226
           FGD +  V  SVF  +  V +LPY+QQ +D++ D
Sbjct: 119 FGDRITSVDCSVFGQIGAVFYLPYRQQISDLLED 152


>U29535-7|AAM81113.1|  275|Caenorhabditis elegans Hypothetical
           protein C25H3.7b protein.
          Length = 275

 Score = 31.1 bits (67), Expect = 0.32
 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +2

Query: 128 FGDDLLPVHKSVFYHL-LVHFLPYKQQDADIISD 226
           FGD +  V  SVF  +  V +LPY+QQ +D++ D
Sbjct: 219 FGDRITSVDCSVFGQIGAVFYLPYRQQISDLLED 252


>Z99709-1|CAB16858.1|  488|Caenorhabditis elegans Hypothetical
           protein C47B2.1 protein.
          Length = 488

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +3

Query: 78  LKYLYSLISRFENFTA---FLVMTCCQCIKVFFTISLYTFYLTNSKMLTSSVTK 230
           ++Y YSL S    F +   F+V + C  +  FFT+    F+LT    L   +TK
Sbjct: 1   MQYFYSLFSLDHLFISRYWFVVCSYCSLLFYFFTVDFPYFFLTKCS-LNFRITK 53


>U55370-1|AAA97993.3|  313|Caenorhabditis elegans Serpentine
           receptor, class x protein77 protein.
          Length = 313

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 99  ISRFENFTAFLVMTCCQCIKVFFTISLYTFYLTNSKMLTS 218
           IS + N  A ++M    CI  FF   + T + T+ K  TS
Sbjct: 11  ISDWPNAAAAVLMITNTCIGFFFNFLIITSFFTDKKQKTS 50


>AF106579-8|AAC78201.1|  710|Caenorhabditis elegans Hypothetical
           protein F54E2.5 protein.
          Length = 710

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 14/62 (22%), Positives = 29/62 (46%)
 Frame = +3

Query: 57  LASRLNDLKYLYSLISRFENFTAFLVMTCCQCIKVFFTISLYTFYLTNSKMLTSSVTKKV 236
           +A + + + +L++      N TAFLV      +++    +  TF+   S+ +   V  +V
Sbjct: 631 VAFQASSVVFLFAQNFEITNVTAFLVKRFVNTMEILAGAATPTFFFLTSREIRKFVFTRV 690

Query: 237 EP 242
            P
Sbjct: 691 SP 692


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,037,785
Number of Sequences: 27780
Number of extensions: 170540
Number of successful extensions: 401
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)