Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25c01
(686 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 183 2e-47
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 64 2e-11
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 44 2e-05
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 32 0.068
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 27 1.9
SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate dehydrogenase|Sch... 27 3.4
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 27 3.4
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-... 26 4.4
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 26 5.9
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 5.9
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 25 7.8
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 25 7.8
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 183 bits (446), Expect = 2e-47
Identities = 92/126 (73%), Positives = 104/126 (82%), Gaps = 1/126 (0%)
Frame = +3
Query: 300 DNLPPILNALEVQ-NRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIP 476
D+LP ILNALEV+ + RLVLEVAQH+GENTVRTIAMDGTEGLVRG V+D+GSPI IP
Sbjct: 73 DSLPSILNALEVKLPDNKRLVLEVAQHVGENTVRTIAMDGTEGLVRGTAVIDTGSPISIP 132
Query: 477 VGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAP 656
VG TLGRI+NVIGEP+DERGPI K + IHA+AP F + S EIL TGIKVVDLLAP
Sbjct: 133 VGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHADAPSFEEQSTTPEILETGIKVVDLLAP 192
Query: 657 YAKGGK 674
YA+GGK
Sbjct: 193 YARGGK 198
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 64.1 bits (149), Expect = 2e-11
Identities = 33/108 (30%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Frame = +3
Query: 366 VAQHLGENTVRTIAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGP 542
+A +L +TV + G + LVR G+ V + + +PVG LGR+++ +G PID +GP
Sbjct: 90 MALNLEADTVGCVLF-GNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGP 148
Query: 543 IPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKGGKDWVV 686
I T + + +AP + + E + TG+K +D + P +G ++ ++
Sbjct: 149 IKTTERRRVQLKAPGILPRTSVCEPMQTGLKAIDSMVPIGRGQRELII 196
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 44.4 bits (100), Expect = 2e-05
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Frame = +3
Query: 357 VLEVAQHLGENTVRTIAMDGTEGL-VRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 533
VLEVA H V +GT G+ VR + +G +RIPV + LGR+ N G PID+
Sbjct: 63 VLEVAGHKAIVQV----FEGTSGVDVRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPIDK 118
Query: 534 RGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAPYAKGGK 674
+ + I+ +E++ TGI +D L A+G K
Sbjct: 119 GPNLLAEDYLDINGSPINPYARIYPEEMIQTGISSIDGLNSIARGQK 165
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 32.3 bits (70), Expect = 0.068
Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
Frame = -2
Query: 685 TTQSFPPLA*GASRSTTF-IPVTRISCCTDMSTNSGASAWIAAVLSVGMGPRSSIGSPIT 509
T+ PP + ++ + + +P T SC T S +G S+ ++ ++ + P S+ + I
Sbjct: 203 TSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIP 262
Query: 508 LMMRPRVSAPTGIRMGEPESSTGCPRTKPSVPSMAMVRTVFSPKCCATS 362
+ S T P +ST C T S+P T +P TS
Sbjct: 263 IPPTSTSSTDTN-SSPLPTTSTSC-TTSTSIPPTGNSTTPVTPTVPPTS 309
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 27.5 bits (58), Expect = 1.9
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -2
Query: 541 GPRSSIGSPITLMMRPRVSA-PTGIRMGEPESSTGCPRTKPSVPSM 407
G R++ G+P + R+++ PT I PES K S PS+
Sbjct: 154 GKRTAPGNPWAIRSAERLASNPTSIGTSSPESIDNNSNNKKSAPSL 199
>SPBC24C6.04 |||delta-1-pyrroline-5-carboxylate
dehydrogenase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 26.6 bits (56), Expect = 3.4
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Frame = +3
Query: 348 PRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPI 527
P + E +H G N+ EG+V+ L++ P+ IPV + N IGE
Sbjct: 10 PAIKNEPPKHYGPNSA------DREGIVKAYKELEAELPVTIPVIIDGKEVETNTIGE-- 61
Query: 528 DERGPIPTDKTAA-IHAEAPEFVDMSVQQEILVTGIKVVDLLAPYA 662
+R P K A H + V+ ++ E + G KV + L P+A
Sbjct: 62 -QRCPFEHKKVVARYHRAGAKHVEDAI--EAALRGKKVWESL-PFA 103
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1
Query: 92 LVERQQSRIELVTKITNSLRNDPSSAD 12
LVER SR+E+V + +SL N + AD
Sbjct: 889 LVERANSRVEVVHERLSSLENQVTIAD 915
>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
L-lysine forming] |Schizosaccharomyces pombe|chr
1|||Manual
Length = 368
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -3
Query: 327 GHLGSAASCLQTEHPLRHQ*RQLP 256
G GSA SCL H L H +Q P
Sbjct: 140 GFAGSAISCLVWAHQLLHPNKQFP 163
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 417 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 533
T GL G PV +G P+ + +G I + I P+ +
Sbjct: 77 TSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQ 115
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -2
Query: 547 GMGPRSSIGSPITLMMRPRVSAPTGIRMGEPESSTGCPRTKPSVPSMA 404
G G ++S+GS + R+ PT MG S+ G T P+ A
Sbjct: 487 GHGSQTSLGSIKRKSIMERMGRPTSPFMGSSFSNMGSRSTSPTKEGFA 534
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 481 PTGIRMGEPESSTGCPRTKPSVPSMAMV 398
P G +G PES+ KPS PS + +
Sbjct: 795 PLGHALGNPESNNSSNSFKPSHPSQSFL 822
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 208 TAAPVTSDAFSVALFTTVFVAKRPTLQT 125
T + VTS+A S A V +K+P L+T
Sbjct: 521 TESAVTSEALSAARLEAVKASKKPPLRT 548
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,994,093
Number of Sequences: 5004
Number of extensions: 62662
Number of successful extensions: 175
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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