Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25b21
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|...    27   2.2  
SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces pomb...    26   3.8  
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   3.8  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    26   3.8  
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   8.7  

>SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
 Frame = -3

Query: 153 IVDTHSSPKAPSSDCCLACNSRSCFPSLVEFV----VSRFDRSTWAFCEATCRNF 1
           + +  S+ +  S    + CN+ +  P  V F     V+   RSTW F  A   NF
Sbjct: 44  VPEVKSNTQLESKQSSIDCNTNA-IPDSVSFPRLPDVAELGRSTWTFLHAMAANF 97


>SPBC36B7.02 |||Svf1 family protein Svf2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 353

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 139 MCIDNGQEGYMQKFPGLLSIV*SCRPFWLGW 231
           MC D+G  GY+Q   G L ++    P  LGW
Sbjct: 38  MCFDDGSFGYLQIAYGNLGLLVKVTP--LGW 66


>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 256 RVVMSHHPTIPARKVGNFKQWITIPETFACTL 161
           R V S  P+IP+    N + W TIP+ + C L
Sbjct: 173 RDVSSEKPSIPSISFINIRSWRTIPKKW-CVL 203


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = -1

Query: 239 SPNHPSQKGRQL*TMDNNPGNFCMYPSCPLSIHIPRRKRPRLIAV*LAIAEVVFRLWLNS 60
           SP HP Q    L +  +N   F M P+  +  H+P     + I   L++  V+   W++S
Sbjct: 597 SPTHPQQA---LKSSSSNDFYFLMKPNECIFTHVPENPDQQFIMPDLSMPIVMALPWVSS 653

Query: 59  LCHVL 45
           +   L
Sbjct: 654 VYFTL 658


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 456 RYRPNGRPHFRLYLPTRLTTQRQPIHLQWV 545
           RY P GRP+F +   TR TT   P   Q++
Sbjct: 297 RYTPEGRPYF-VDHNTRTTTWVDPRRQQYI 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,388,206
Number of Sequences: 5004
Number of extensions: 51674
Number of successful extensions: 180
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)