Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25b16
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    35   0.013
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    27   3.4  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    26   4.4  
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    26   5.9  

>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 34.7 bits (76), Expect = 0.013
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = -2

Query: 178 TTTAVSYWSIASTTLWTAVHPTRTVSFRTFPVKMTPMWNPSSRWSTVFMSSLSTVVVAS 2
           T T  SYWS+ ST++   V+   T S   FP   +   NP  R  +   +S++    AS
Sbjct: 96  TVTVSSYWSLVSTSVTGTVYVPYTSSVACFPYATSDAPNPIPRGDSATSTSIAPTYSAS 154


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = +2

Query: 158 IRHSRCRGSRKSPGNSQRLTQEGRCRKRCICQWKNSRPCCTDD 286
           I  SRC   +KS     R    GRCR   +    NS  C +DD
Sbjct: 337 ISRSRCSRCKKSKKGCDRQRPCGRCRDAGL----NSEDCISDD 375


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1258

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = -2

Query: 184 GATTTAVSYWSIASTTLWTAVHPTR---TVSFRTFPVKMTPMWNPS-SRWSTVFMSSLST 17
           GA T  +   +  +  L T +H      TV  RT  + M  +      RWSTVF ++ S+
Sbjct: 678 GADTVIMERLASDNPYLQTTIHHLEDYATVGLRTLCIAMREVPEDEYQRWSTVFETAASS 737

Query: 16  VV 11
           +V
Sbjct: 738 LV 739


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
 Frame = +3

Query: 270 LAALMIRYKILKD---LAKNTQVEKMAMAGITPFWFRPFSLTQIRGASQFNLPQKPY*LV 440
           L    I YKI      L    Q      AGI   W++ +S  +   +++F  P   Y  +
Sbjct: 113 LIPCFIAYKITDSHYLLVAIIQSTTAIQAGILTAWYQLYSCKKEESSNKFLCPLSKY--L 170

Query: 441 TYLDILISVFY 473
            YL + I +FY
Sbjct: 171 IYLFLSIHLFY 181


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,540,321
Number of Sequences: 5004
Number of extensions: 50281
Number of successful extensions: 140
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)