Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25b16
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0913 + 12344096-12344125,12344284-12345970,12346243-123465...    29   2.6  
07_03_1048 - 23545060-23546381,23546479-23546554                       29   3.5  
01_06_0734 + 31569017-31569358,31569832-31569906,31570009-315701...    29   3.5  
07_03_0509 - 18903315-18903443,18903547-18903904,18904012-189040...    28   8.0  
01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,260...    28   8.0  

>03_02_0913 + 12344096-12344125,12344284-12345970,12346243-12346573,
            12346712-12347567,12347760-12347883,12348469-12348688,
            12348771-12349229,12349318-12349519
          Length = 1302

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
 Frame = -2

Query: 301  SILY-LIISAARS*IFPLTDASFSTSTFLSQPLRVSWALTGATTTAVSYWSIASTTLWTA 125
            S+ Y LI ++  + +  + D   S +T L  P      L         +W     TLW +
Sbjct: 1101 SVFYSLIYTSIPTVVVGILDKDLSHNTLLHYPRLYETGLQNEGYNLTLFWITMLDTLWQS 1160

Query: 124  VHPTRTVSFRTFPVKMTPMWNPSSRWS 44
            +     V F T+ +    +W+  S W+
Sbjct: 1161 L-VLFYVPFFTYNISTMDIWSMGSLWT 1186


>07_03_1048 - 23545060-23546381,23546479-23546554
          Length = 465

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -2

Query: 223 FLSQPLRVSWALTGATTTAV 164
           FL+ P+RV+W LT AT TA+
Sbjct: 153 FLNLPVRVAWRLTVATGTAI 172


>01_06_0734 +
           31569017-31569358,31569832-31569906,31570009-31570159,
           31570716-31570784,31570864-31571036,31571474-31571611,
           31571747-31571872,31571951-31572049,31573175-31573298,
           31573465-31573528,31573798-31573852,31573951-31574075,
           31574228-31574301,31574436-31574485,31574722-31574808,
           31574897-31574947,31575025-31575108,31575400-31575498
          Length = 661

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +3

Query: 42  VDHLDEGFHIGVIFTGKVRKDTVRVG 119
           V  ++  F++G I TG+VR   VRVG
Sbjct: 271 VSMMERDFYLGRILTGRVRSGVVRVG 296


>07_03_0509 -
           18903315-18903443,18903547-18903904,18904012-18904068,
           18904151-18904237,18904337-18904875
          Length = 389

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 28/97 (28%), Positives = 37/97 (38%)
 Frame = -2

Query: 391 ICVNENGLNQNGVIPAIAIFSTCVFFARSFSILYLIISAARS*IFPLTDASFSTSTFLSQ 212
           + VN  GL   G   A++I     F+A   S L L+    RS  F  T   FS   F   
Sbjct: 113 LLVNALGLGLAGAGAAVSI----TFWA---SCLMLLAYVLRSERFAETWNGFSAEAFRFV 165

Query: 211 PLRVSWALTGATTTAVSYWSIASTTLWTAVHPTRTVS 101
              +  A   A    + YW+     L   + P  TVS
Sbjct: 166 VPTIKLATPSAVMVCLEYWAFELLVLIAGLLPNPTVS 202


>01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,
            2602637-2602810,2603032-2603098,2603735-2603757,
            2603899-2604001,2604087-2604848,2605098-2605292,
            2605496-2606115,2606429-2606480,2606558-2607197,
            2608366-2608574,2608660-2609189,2609500-2609566,
            2609651-2609728,2610415-2610483,2610569-2610643
          Length = 2021

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
 Frame = -1

Query: 317  LRQILQYFVPYHQCSKVVN----FSIDRCIFFYIYLPESAFASFLGSYGSHDNGCVLLVH 150
            L Q    F P H  SK+        I R + FY     + ++  L    + DN  V  +H
Sbjct: 968  LPQWTHVFRPLHNISKIATSKAVLQIVRAVLFY-----AVYSDPLSVSRAPDNVLVTGLH 1022

Query: 149  SVYHALDCCPSHS----NSVFPDLSREDD 75
             ++ ALD C S S    N    D+ + DD
Sbjct: 1023 LLWLALDICESESKRYANQYGMDIVQHDD 1051


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,630,409
Number of Sequences: 37544
Number of extensions: 302772
Number of successful extensions: 895
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)