Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25b16
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36719-4|CAA85315.2|  513|Caenorhabditis elegans Hypothetical pr...    31   0.58 
Z74473-5|CAI79195.1|  245|Caenorhabditis elegans Hypothetical pr...    30   1.8  
AF077534-3|AAC26290.1|  389|Caenorhabditis elegans Hypothetical ...    29   2.4  
AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensor...    29   2.4  
U64835-5|AAG24196.1|  592|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AL032637-15|CAA21616.2|  370|Caenorhabditis elegans Hypothetical...    28   5.4  
Z82071-5|CAB04919.2|  514|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AY204180-1|AAO39184.1|  514|Caenorhabditis elegans nuclear recep...    28   7.2  
AL110478-13|CAC14397.1|  514|Caenorhabditis elegans Hypothetical...    28   7.2  
Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical p...    27   9.5  
Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z98877-4|CAB54473.2|  796|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z69664-5|CAE17882.2|  360|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z36719-4|CAA85315.2|  513|Caenorhabditis elegans Hypothetical
           protein C06C3.8 protein.
          Length = 513

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -1

Query: 206 ASFLGSYGSHDNGCVLLVHSVYHALDCCPSHSNSVFPDLSREDDPYVEPLVQV 48
           +S L S   H      L+H    +LDC P+   S+  D S+E D  V    ++
Sbjct: 420 SSRLPSNDEHPGAKPTLIHHTTPSLDCQPTKHESIHSDFSKEMDQLVNQATRI 472


>Z74473-5|CAI79195.1|  245|Caenorhabditis elegans Hypothetical
           protein F56H9.6 protein.
          Length = 245

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 21/73 (28%), Positives = 31/73 (42%)
 Frame = -2

Query: 256 PLTDASFSTSTFLSQPLRVSWALTGATTTAVSYWSIASTTLWTAVHPTRTVSFRTFPVKM 77
           P+T  +  T+T  +     +   T  TTT  +  S  STT  T   PT T S  T     
Sbjct: 58  PVTTTTTPTTTSTTSTTTTTTPTTTTTTTPTTTTSTTSTT--TTTTPTTTTSTTTTTTTT 115

Query: 76  TPMWNPSSRWSTV 38
           T    P++  +T+
Sbjct: 116 TTTATPTTTTTTM 128


>AF077534-3|AAC26290.1|  389|Caenorhabditis elegans Hypothetical
           protein K07D4.6 protein.
          Length = 389

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -2

Query: 235 STSTFLSQPLRVSWALTGATTTAVSYWSIASTTLWTAVHPTRTVSFRTFPVKMTPMW 65
           +TST  ++P   +   T  TTT  +  S  STT  T   PT T +  +       +W
Sbjct: 270 TTSTTTTEPTTTTSTTTQTTTTVPTSTSTISTTSTTTTTPTTTTTTTSTTTSDDLLW 326


>AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensory
           abnormality protein1, isoform e protein.
          Length = 1954

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 155 PIRHSRCRGSRKSPGNSQRLTQEGRCRKRCICQ 253
           PI H+  RG     GNS R  +   CR RC+ Q
Sbjct: 25  PINHTVSRGCG---GNSNRFMRRAHCRNRCVKQ 54


>U64835-5|AAG24196.1|  592|Caenorhabditis elegans Hypothetical
           protein T09D3.3 protein.
          Length = 592

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 20/62 (32%), Positives = 33/62 (53%)
 Frame = -2

Query: 250 TDASFSTSTFLSQPLRVSWALTGATTTAVSYWSIASTTLWTAVHPTRTVSFRTFPVKMTP 71
           T +S +T+T  + P+ V+   T  TTT  +Y +  ST+  T + P  T S     V +TP
Sbjct: 461 TTSSSTTTTTTTTPVPVTSTTTEPTTT--TYTTSTSTSTTTTLPP--TTSTPKIVVNLTP 516

Query: 70  MW 65
           ++
Sbjct: 517 IY 518


>AL032637-15|CAA21616.2|  370|Caenorhabditis elegans Hypothetical
           protein Y43F8C.16 protein.
          Length = 370

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 23/78 (29%), Positives = 37/78 (47%)
 Frame = -2

Query: 235 STSTFLSQPLRVSWALTGATTTAVSYWSIASTTLWTAVHPTRTVSFRTFPVKMTPMWNPS 56
           ST T  + P   + ++  +TTTA    +I STT+     P  + S  T  +  T    P+
Sbjct: 216 STITSTTVPESSTTSVVQSTTTAEPTSTITSTTV-----PESSTSLLTSTLASTTTLIPT 270

Query: 55  SRWSTVFMSSLSTVVVAS 2
           S  ST+ ++S  T  + S
Sbjct: 271 STMSTITLTSDRTSTITS 288


>Z82071-5|CAB04919.2|  514|Caenorhabditis elegans Hypothetical
           protein W05B5.3a protein.
          Length = 514

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
 Frame = -2

Query: 235 STSTFLSQPLRVSWALTGATTTAV--SYWSIASTTLWTAVHPTRTVSFRTFPVKMTPMWN 62
           STS  L   L +S  LT   T  +  S+ S  +T+  + + P+ + +FR  PV    + N
Sbjct: 4   STSGSLPCHLPLS-LLTNLQTPPIDTSFSSPPATSSSSLLSPSPSSAFR--PVVPKSLMN 60

Query: 61  PSSRWSTVFMSSLSTVVVAS 2
           P     T +MS++ ++VV++
Sbjct: 61  PQPAMDTFYMSAIQSLVVST 80


>AY204180-1|AAO39184.1|  514|Caenorhabditis elegans nuclear receptor
           NHR-85 protein.
          Length = 514

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
 Frame = -2

Query: 235 STSTFLSQPLRVSWALTGATTTAV--SYWSIASTTLWTAVHPTRTVSFRTFPVKMTPMWN 62
           STS  L   L +S  LT   T  +  S+ S  +T+  + + P+ + +FR  PV    + N
Sbjct: 4   STSGSLPCHLPLS-LLTNLQTPPIDTSFSSPPATSSSSLLSPSPSSAFR--PVVPKSLMN 60

Query: 61  PSSRWSTVFMSSLSTVVVAS 2
           P     T +MS++ ++VV++
Sbjct: 61  PQPAMDTFYMSAIQSLVVST 80


>AL110478-13|CAC14397.1|  514|Caenorhabditis elegans Hypothetical
           protein W05B5.3a protein.
          Length = 514

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
 Frame = -2

Query: 235 STSTFLSQPLRVSWALTGATTTAV--SYWSIASTTLWTAVHPTRTVSFRTFPVKMTPMWN 62
           STS  L   L +S  LT   T  +  S+ S  +T+  + + P+ + +FR  PV    + N
Sbjct: 4   STSGSLPCHLPLS-LLTNLQTPPIDTSFSSPPATSSSSLLSPSPSSAFR--PVVPKSLMN 60

Query: 61  PSSRWSTVFMSSLSTVVVAS 2
           P     T +MS++ ++VV++
Sbjct: 61  PQPAMDTFYMSAIQSLVVST 80


>Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical
           protein Y69H2.10b protein.
          Length = 975

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +2

Query: 89  KGPERHCSSGMDSSPERGRRYGPIRHSRCRGSRKSPGNSQRLTQEGRCRKRCIC 250
           +  +  C    D  PE G+     R  +C G+ K+P  +    +   C++ CIC
Sbjct: 783 RSSDGECYKPKDCPPECGQNE-EYRCEKCAGTCKNPEPNCPGPKNKSCKRACIC 835


>Z98877-5|CAD56616.1|  731|Caenorhabditis elegans Hypothetical
           protein Y69H2.3c protein.
          Length = 731

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +2

Query: 89  KGPERHCSSGMDSSPERGRRYGPIRHSRCRGSRKSPGNSQRLTQEGRCRKRCIC 250
           +  +  C    D  PE G+     R  +C G+ K+P  +    +   C++ CIC
Sbjct: 536 RSSDGECYKPKDCPPECGQNE-EYRCEKCAGTCKNPEPNCPGPKNKSCKRACIC 588


>Z98877-4|CAB54473.2|  796|Caenorhabditis elegans Hypothetical
           protein Y69H2.3b protein.
          Length = 796

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/54 (25%), Positives = 24/54 (44%)
 Frame = +2

Query: 89  KGPERHCSSGMDSSPERGRRYGPIRHSRCRGSRKSPGNSQRLTQEGRCRKRCIC 250
           +  +  C    D  PE G+     R  +C G+ K+P  +    +   C++ CIC
Sbjct: 601 RSSDGECYKPKDCPPECGQNE-EYRCEKCAGTCKNPEPNCPGPKNKSCKRACIC 653


>Z69664-5|CAE17882.2|  360|Caenorhabditis elegans Hypothetical
           protein K04D7.6 protein.
          Length = 360

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 1/101 (0%)
 Frame = -2

Query: 361 NGVIPAIAIFSTCVFFARSFSILYLIISAARS*IFPLTDASFSTSTFLSQPLRVSWALTG 182
           N VI  + +    V  ++ F I Y++++  R   F  T      +     P    W+++ 
Sbjct: 223 NTVITIMDLLFMVVGISQQFPIPYIVMTTYRYNCFEATPVFILIAFGALMPDLKEWSISK 282

Query: 181 ATTTAVSYWSIAS-TTLWTAVHPTRTVSFRTFPVKMTPMWN 62
            TTTA +   +   T+  ++  P   VS  + P    P+ N
Sbjct: 283 TTTTAEATIIVTEPTSSSSSNRPIPIVSQSSIPESSIPIPN 323


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,132,643
Number of Sequences: 27780
Number of extensions: 294849
Number of successful extensions: 879
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)