Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25b16
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       24   1.2  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          23   2.7  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   4.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.3  

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 226 TFLSQPLRVSWALT 185
           TFL  PL + WA+T
Sbjct: 88  TFLMMPLEIGWAIT 101


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +2

Query: 164 HSRCRGSRKSPGNSQRLTQEGRCRK 238
           HSR   SR   GNS R   E  C +
Sbjct: 231 HSRYEDSRHEDGNSYRNDGERSCSR 255


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 444 YLDILISVFYCNSRRTK 494
           Y+D L  V +CN   T+
Sbjct: 300 YIDFLFQVLHCNMENTE 316


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 175 TTAVSYWSIASTTLWTAVH 119
           T A + + I STTLW   H
Sbjct: 431 TKASATFGIPSTTLWQRAH 449


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -1

Query: 140 HALDCCPSHSNS 105
           H+ + CP+HS S
Sbjct: 277 HSCEACPAHSKS 288


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,910
Number of Sequences: 438
Number of extensions: 3670
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)