Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25b11
(691 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal prote... 351 4e-97
Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal prote... 351 4e-97
Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical p... 351 4e-97
Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical pr... 351 4e-97
Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical p... 263 7e-71
Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical pr... 263 7e-71
Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical p... 139 1e-33
Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical pr... 139 1e-33
AF003146-5|AAB54199.1| 299|Caenorhabditis elegans Hypothetical ... 30 1.4
AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal ne... 29 3.1
>Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 351 bits (862), Expect = 4e-97
Identities = 155/221 (70%), Positives = 183/221 (82%)
Frame = +1
Query: 28 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 387
D+PGSK+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120
Query: 388 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 567
NW WQDE G+K IE DF K+ +YCS +RVIAHTQMK+L++RQKKAH+
Sbjct: 121 NWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHL 180
Query: 568 MEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIG 690
+EIQ+NGGTIE KV WAREHLEK + VD+VFAQDEMID IG
Sbjct: 181 VEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIG 221
>Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 351 bits (862), Expect = 4e-97
Identities = 155/221 (70%), Positives = 183/221 (82%)
Frame = +1
Query: 28 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 387
D+PGSK+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120
Query: 388 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 567
NW WQDE G+K IE DF K+ +YCS +RVIAHTQMK+L++RQKKAH+
Sbjct: 121 NWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHL 180
Query: 568 MEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIG 690
+EIQ+NGGTIE KV WAREHLEK + VD+VFAQDEMID IG
Sbjct: 181 VEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIG 221
>Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 351 bits (862), Expect = 4e-97
Identities = 155/221 (70%), Positives = 183/221 (82%)
Frame = +1
Query: 28 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 387
D+PGSK+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120
Query: 388 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 567
NW WQDE G+K IE DF K+ +YCS +RVIAHTQMK+L++RQKKAH+
Sbjct: 121 NWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHL 180
Query: 568 MEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIG 690
+EIQ+NGGTIE KV WAREHLEK + VD+VFAQDEMID IG
Sbjct: 181 VEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIG 221
>Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 351 bits (862), Expect = 4e-97
Identities = 155/221 (70%), Positives = 183/221 (82%)
Frame = +1
Query: 28 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 387
D+PGSK+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120
Query: 388 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHI 567
NW WQDE G+K IE DF K+ +YCS +RVIAHTQMK+L++RQKKAH+
Sbjct: 121 NWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHL 180
Query: 568 MEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIG 690
+EIQ+NGGTIE KV WAREHLEK + VD+VFAQDEMID IG
Sbjct: 181 VEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEMIDTIG 221
>Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 263 bits (645), Expect = 7e-71
Identities = 115/168 (68%), Positives = 135/168 (80%)
Frame = +1
Query: 28 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 387
D+PGSK+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120
Query: 388 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQM 531
NW WQDE G+K IE DF K+ +YCS +RVIAHTQM
Sbjct: 121 NWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168
>Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 263 bits (645), Expect = 7e-71
Identities = 115/168 (68%), Positives = 135/168 (80%)
Frame = +1
Query: 28 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP 207
MSHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDV 60
Query: 208 DRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 387
D+PGSK+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY
Sbjct: 61 DKPGSKVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYS 120
Query: 388 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQM 531
NW WQDE G+K IE DF K+ +YCS +RVIAHTQM
Sbjct: 121 NWAKSKKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAHTQM 168
>Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 139 bits (337), Expect = 1e-33
Identities = 62/85 (72%), Positives = 74/85 (87%)
Frame = +1
Query: 436 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKW 615
WQDE G+K IE DF K+ +YCS +RVIAHTQMK+L++RQKKAH++EIQ+NGGTIE KV W
Sbjct: 39 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDW 98
Query: 616 AREHLEKPIPVDSVFAQDEMIDCIG 690
AREHLEK + VD+VFAQDEMID IG
Sbjct: 99 AREHLEKQVQVDTVFAQDEMIDTIG 123
Score = 63.7 bits (148), Expect = 1e-10
Identities = 27/34 (79%), Positives = 30/34 (88%)
Frame = +1
Query: 28 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPK 129
MSHRKFSAPRHG MGF PKKRSR +RG++KAF K
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34
>Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 139 bits (337), Expect = 1e-33
Identities = 62/85 (72%), Positives = 74/85 (87%)
Frame = +1
Query: 436 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDKVKW 615
WQDE G+K IE DF K+ +YCS +RVIAHTQMK+L++RQKKAH++EIQ+NGGTIE KV W
Sbjct: 39 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDW 98
Query: 616 AREHLEKPIPVDSVFAQDEMIDCIG 690
AREHLEK + VD+VFAQDEMID IG
Sbjct: 99 AREHLEKQVQVDTVFAQDEMIDTIG 123
Score = 63.7 bits (148), Expect = 1e-10
Identities = 27/34 (79%), Positives = 30/34 (88%)
Frame = +1
Query: 28 MSHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPK 129
MSHRKFSAPRHG MGF PKKRSR +RG++KAF K
Sbjct: 1 MSHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34
>AF003146-5|AAB54199.1| 299|Caenorhabditis elegans Hypothetical
protein F56F4.2 protein.
Length = 299
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 268 TPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWY 396
T P + GY++ G+R VW E S+ + KNW+
Sbjct: 201 TDPNGYFDIAGYVDQSSGVRGRFWVWHECFSQKYHKDPCKNWF 243
>AF043702-7|AAK21492.4| 1655|Caenorhabditis elegans Intestinal
neurexin-like protein 1 protein.
Length = 1655
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +3
Query: 249 GCHHHRDSSDGLCRCCWIH*DPSWTTRSVDCLGGAYV*RLSTSLLQKLVQMQEEGF 416
GC + G C W + DPS T + DC +Y ++ L + V M+ GF
Sbjct: 1160 GCSSITCLNGGHCSVAWANTDPSAATTTCDCSRTSYT--GASCSLDEGVHMERSGF 1213
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,951,424
Number of Sequences: 27780
Number of extensions: 366303
Number of successful extensions: 1031
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -