Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25b07
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0926 - 20861383-20862198,20862359-20862430,20862938-208631...    50   2e-06
05_04_0148 - 18426903-18427106,18430516-18430594,18430752-184309...    31   1.1  
01_05_0161 - 18757122-18757331,18757931-18758488                       31   1.1  
04_04_0781 - 28034978-28036615                                         29   2.5  
03_05_0793 + 27755704-27756386,27756473-27757274,27757379-277576...    29   3.3  
10_08_0008 - 14046647-14047462,14050744-14051499                       29   4.4  
06_03_1294 - 29080347-29081447                                         29   4.4  
02_05_0235 - 27068516-27069032,27069697-27069788,27070056-270702...    28   7.7  

>04_03_0926 -
           20861383-20862198,20862359-20862430,20862938-20863123,
           20863214-20863304,20863698-20863852,20864501-20864579,
           20866797-20867263
          Length = 621

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 22/55 (40%), Positives = 38/55 (69%), Gaps = 3/55 (5%)
 Frame = +3

Query: 327 LLWGDHVKEDVFRRWA-QGFQFS--PDEPSALIQQEGGPCAAIAPVQGFLLKILL 482
           +++G+ ++++V  +W+ QG +FS  P+    L+Q EGGPC  +A VQ ++LK LL
Sbjct: 136 MVFGNKLEKEVLAQWSNQGIRFSSDPETTMGLVQHEGGPCGVLATVQAYVLKYLL 190


>05_04_0148 -
           18426903-18427106,18430516-18430594,18430752-18430935,
           18431020-18431063,18432028-18432165,18432713-18434511
          Length = 815

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 283 RVAWRWSASWQARDACCGG 339
           R  WRW+ S    D CCGG
Sbjct: 601 RRGWRWNGSGHVDDGCCGG 619


>01_05_0161 - 18757122-18757331,18757931-18758488
          Length = 255

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/47 (36%), Positives = 21/47 (44%)
 Frame = +1

Query: 301 SASWQARDACCGGTTSKKMFSDVGRKVFNSVLMNPAPSFSRRVDLAL 441
           SA+  A+ A C  T     F   G +  +  L  PAP   RR  LAL
Sbjct: 124 SANAAAQPAACSSTAVASPFHSAGHRALDRQLRPPAPLRRRRCHLAL 170


>04_04_0781 - 28034978-28036615
          Length = 545

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
 Frame = +3

Query: 279 SASSVALERELAGTRRLLWGDHVKEDVFRRW--AQGFQFSPDEPSALIQQEGGP 434
           + SSV      AG  + +WGD   E    RW  A G +F P +    +    GP
Sbjct: 411 AGSSVTYSIYSAGRMKTVWGDDCLEFRPERWLSADGTKFEPHDSFRFVAFNAGP 464


>03_05_0793 +
           27755704-27756386,27756473-27757274,27757379-27757634,
           27758355-27758566,27760494-27760709
          Length = 722

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 126 FETMSVKKYSNGIINHTLISN 64
           FE M+ K +SNGI+N  L+S+
Sbjct: 608 FEEMACKSHSNGIVNEDLVSS 628


>10_08_0008 - 14046647-14047462,14050744-14051499
          Length = 523

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +1

Query: 361 SDVGRKVFNSVLMNPAPSFS 420
           +DVG  +FNS L++P PSF+
Sbjct: 195 ADVGVLIFNSSLLSPTPSFT 214


>06_03_1294 - 29080347-29081447
          Length = 366

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 410 PHSAGGWTLRCDRPS 454
           P +AGGWT RC  PS
Sbjct: 91  PATAGGWTCRCSAPS 105


>02_05_0235 -
           27068516-27069032,27069697-27069788,27070056-27070289,
           27071569-27071676,27071796-27071855,27072368-27072443,
           27072550-27072710,27076919-27076981,27077061-27077148,
           27077568-27078308,27078406-27079033,27079314-27079368,
           27082073-27083527
          Length = 1425

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
 Frame = +3

Query: 279 SASSVALERELAGTRRLLWGDHVKEDVFRRW--AQGFQFSPDEPSALIQQEGGP 434
           + SSV      AG  + +WG+   E    RW  A G +F P +    +    GP
Sbjct: 381 AGSSVTYSIYSAGRMKTVWGEDCLEFRPERWLSADGSKFEPHDSYKFVAFNAGP 434


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,977,159
Number of Sequences: 37544
Number of extensions: 378706
Number of successful extensions: 947
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)