Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25b07
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    25   0.49 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    25   0.49 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    25   0.65 
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    23   2.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.6  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    23   2.6  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   4.6  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   6.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   8.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.0  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = -2

Query: 308 LALQRHATRTHRFFVTLTITQLQLCVGFNPFNPVDTSRFILLALCKYVVH 159
           + L+RH +     +VTLTI  + + +      P  T R I+  L  +++H
Sbjct: 237 ILLRRHYSMNSTTYVTLTIVLMTMTLMTLWLEPSSTERMIIANL-NFILH 285


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 17/55 (30%), Positives = 24/55 (43%)
 Frame = +3

Query: 432 PCAAIAPVQGFLLKILLSETPGHSFQDLTSEKCNSLLVRAVCTILSQCLAPKYNV 596
           P AAI  V G +  I+      + F+    + CN +    VC IL   L P + V
Sbjct: 332 PLAAI--VLGAIGSIVFYIISRYVFRSALEDYCNIVATHLVCGILGSILVPFFYV 384


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 25.0 bits (52), Expect = 0.65
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +3

Query: 525 KCNSLLVRAVCTI--LSQCLAPKYNVAVYRKNESG-AETSGSNSVSVD 659
           KC    ++   T+    +C+ P+Y  AV RK E    E    NS +++
Sbjct: 238 KCQECRLKKCLTVGMRPECVVPEYQCAVKRKEEKAQKEKDKPNSTTMN 285


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +1

Query: 439 LRSPQYKDFCLR-FSYQRLQDIVFKT*HRRSATLYL*ELCVR 561
           +  PQ   +C R FS        F+  H +S TLY+ E C R
Sbjct: 2   INEPQECPYCRRNFSCYYSLKRHFQDKHEQSDTLYVCEFCNR 43


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = -1

Query: 297 APRYSHSSFLCYTYYNSTTAVCRFQSFQPRRHIEIYTS 184
           A +Y      C    NST AVC      PRRH  +  S
Sbjct: 83  ASKYCGIGKECELSPNSTIAVCVCMRKCPRRHRPVCAS 120


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +3

Query: 525 KCNSLLVRAVCTI--LSQCLAPKYNVAVYRKNE 617
           KC    ++   T+    +C+ P+Y  AV RK +
Sbjct: 35  KCQECRLKKCLTVGMRPECMVPEYQCAVKRKEK 67


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +1

Query: 280 VRVAWRWSASWQARDACCGGTTSKKMF 360
           + + W  + SW+A D  C      +MF
Sbjct: 94  LEIGWAITVSWKAGDVMCRIMAFFRMF 120


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 561 ILSQCLAPKYNVAVYRKNESGAETSGS 641
           IL   L PK     ++KN +G E S S
Sbjct: 335 ILKSTLTPKLARKQFQKNTTGLERSRS 361


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -2

Query: 446 DRSARSTLLLNEGAGFIRTELKTL 375
           D   R T  LN+   F+R  L  L
Sbjct: 23  DTCGRDTYALNQSLHFVRASLSNL 46


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -2

Query: 446 DRSARSTLLLNEGAGFIRTELKTL 375
           D   R T  LN+   F+R  L  L
Sbjct: 113 DTCGRDTYALNQSLHFVRASLSNL 136


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,825
Number of Sequences: 438
Number of extensions: 4395
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)