Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25b06
         (532 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     24   0.96 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    24   0.96 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           24   0.96 
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   5.1  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   5.1  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   6.8  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 23.8 bits (49), Expect = 0.96
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -3

Query: 407 EYHLERL---RRRADTDHSVVLSIKII*QWF 324
           E+H  R    RRR +  H++VLS + I  WF
Sbjct: 251 EFHYNRYLTRRRRIEIAHTLVLSERQIKIWF 281


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.8 bits (49), Expect = 0.96
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -3

Query: 407 EYHLERL---RRRADTDHSVVLSIKII*QWF 324
           E+H  R    RRR +  H++VLS + I  WF
Sbjct: 251 EFHYNRYLTRRRRIEIAHTLVLSERQIKIWF 281


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.8 bits (49), Expect = 0.96
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -3

Query: 407 EYHLERL---RRRADTDHSVVLSIKII*QWF 324
           E+H  R    RRR +  H++VLS + I  WF
Sbjct: 251 EFHYNRYLTRRRRIEIAHTLVLSERQIKIWF 281


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 315 PSPEPLSNYLDAQYYGVISIGTPP 386
           P P P+  +  A+Y+   + G PP
Sbjct: 163 PPPPPVYTHHYARYHPYPNFGVPP 186


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 21.4 bits (43), Expect = 5.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 177 FFLALIASSVMALYRVPLHR 236
           FFLAL    V+++Y    HR
Sbjct: 39  FFLALSIGVVVSIYSKSFHR 58


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 17  LICFYYLLRCFSIDKT 64
           L+C YY  R F I  T
Sbjct: 295 LLCIYYFCRAFIIFPT 310


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,998
Number of Sequences: 336
Number of extensions: 2730
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12887571
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)