Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc25b03
         (540 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY118868-1|AAM50728.1|  156|Drosophila melanogaster GM26647p pro...   200   7e-52
AF216206-1|AAF65682.1|  156|Drosophila melanogaster ribosomal pr...   200   7e-52
AE014298-2436|AAN09413.1|  156|Drosophila melanogaster CG4464-PC...   200   7e-52
AE014298-2435|AAN09412.1|  156|Drosophila melanogaster CG4464-PB...   200   7e-52
AE014298-2434|AAF48633.1|  156|Drosophila melanogaster CG4464-PA...   200   7e-52
X73153-1|CAA51677.1|  156|Drosophila melanogaster ribosomal prot...   200   1e-51
AY119257-1|AAM51117.1|  155|Drosophila melanogaster SD22440p pro...   169   2e-42
AE014297-3411|AAN13960.1|  155|Drosophila melanogaster CG5338-PB...   169   2e-42
AJ271740-1|CAB93524.1| 16215|Drosophila melanogaster D-Titin pro...    28   7.1  
AE014296-405|AAG22226.2| 18074|Drosophila melanogaster CG1915-PC...    28   7.1  

>AY118868-1|AAM50728.1|  156|Drosophila melanogaster GM26647p
           protein.
          Length = 156

 Score =  200 bits (489), Expect = 7e-52
 Identities = 92/134 (68%), Positives = 110/134 (82%)
 Frame = +3

Query: 42  MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 221
           M  VTVKD++Q  + K VA  LKKTGK+KVP+ MD+VKTA+FKELAPYDPDWFYVRCA+I
Sbjct: 1   MPGVTVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIVKTAKFKELAPYDPDWFYVRCASI 60

Query: 222 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGG 401
           LRH+Y RSP GV ++TKI+GGRKRNGV PSHFCR++   ARKALQ+LE  +LVEK  DGG
Sbjct: 61  LRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAARKALQALEHARLVEKHPDGG 120

Query: 402 RILTTQGXRXLDRI 443
           R L++ G R LDRI
Sbjct: 121 RKLSSIGQRDLDRI 134


>AF216206-1|AAF65682.1|  156|Drosophila melanogaster ribosomal
           protein S19 protein.
          Length = 156

 Score =  200 bits (489), Expect = 7e-52
 Identities = 92/134 (68%), Positives = 110/134 (82%)
 Frame = +3

Query: 42  MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 221
           M  VTVKD++Q  + K VA  LKKTGK+KVP+ MD+VKTA+FKELAPYDPDWFYVRCA+I
Sbjct: 1   MPGVTVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIVKTAKFKELAPYDPDWFYVRCASI 60

Query: 222 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGG 401
           LRH+Y RSP GV ++TKI+GGRKRNGV PSHFCR++   ARKALQ+LE  +LVEK  DGG
Sbjct: 61  LRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAARKALQALEHARLVEKHPDGG 120

Query: 402 RILTTQGXRXLDRI 443
           R L++ G R LDRI
Sbjct: 121 RKLSSIGQRDLDRI 134


>AE014298-2436|AAN09413.1|  156|Drosophila melanogaster CG4464-PC,
           isoform C protein.
          Length = 156

 Score =  200 bits (489), Expect = 7e-52
 Identities = 92/134 (68%), Positives = 110/134 (82%)
 Frame = +3

Query: 42  MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 221
           M  VTVKD++Q  + K VA  LKKTGK+KVP+ MD+VKTA+FKELAPYDPDWFYVRCA+I
Sbjct: 1   MPGVTVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIVKTAKFKELAPYDPDWFYVRCASI 60

Query: 222 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGG 401
           LRH+Y RSP GV ++TKI+GGRKRNGV PSHFCR++   ARKALQ+LE  +LVEK  DGG
Sbjct: 61  LRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAARKALQALEHARLVEKHPDGG 120

Query: 402 RILTTQGXRXLDRI 443
           R L++ G R LDRI
Sbjct: 121 RKLSSIGQRDLDRI 134


>AE014298-2435|AAN09412.1|  156|Drosophila melanogaster CG4464-PB,
           isoform B protein.
          Length = 156

 Score =  200 bits (489), Expect = 7e-52
 Identities = 92/134 (68%), Positives = 110/134 (82%)
 Frame = +3

Query: 42  MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 221
           M  VTVKD++Q  + K VA  LKKTGK+KVP+ MD+VKTA+FKELAPYDPDWFYVRCA+I
Sbjct: 1   MPGVTVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIVKTAKFKELAPYDPDWFYVRCASI 60

Query: 222 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGG 401
           LRH+Y RSP GV ++TKI+GGRKRNGV PSHFCR++   ARKALQ+LE  +LVEK  DGG
Sbjct: 61  LRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAARKALQALEHARLVEKHPDGG 120

Query: 402 RILTTQGXRXLDRI 443
           R L++ G R LDRI
Sbjct: 121 RKLSSIGQRDLDRI 134


>AE014298-2434|AAF48633.1|  156|Drosophila melanogaster CG4464-PA,
           isoform A protein.
          Length = 156

 Score =  200 bits (489), Expect = 7e-52
 Identities = 92/134 (68%), Positives = 110/134 (82%)
 Frame = +3

Query: 42  MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 221
           M  VTVKD++Q  + K VA  LKKTGK+KVP+ MD+VKTA+FKELAPYDPDWFYVRCA+I
Sbjct: 1   MPGVTVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIVKTAKFKELAPYDPDWFYVRCASI 60

Query: 222 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGG 401
           LRH+Y RSP GV ++TKI+GGRKRNGV PSHFCR++   ARKALQ+LE  +LVEK  DGG
Sbjct: 61  LRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAARKALQALEHARLVEKHPDGG 120

Query: 402 RILTTQGXRXLDRI 443
           R L++ G R LDRI
Sbjct: 121 RKLSSIGQRDLDRI 134


>X73153-1|CAA51677.1|  156|Drosophila melanogaster ribosomal protein
           S19 protein.
          Length = 156

 Score =  200 bits (488), Expect = 1e-51
 Identities = 91/134 (67%), Positives = 110/134 (82%)
 Frame = +3

Query: 42  MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 221
           M  VTVKD++Q  + K VA  LKKTGK+KVP+ MD++KTA+FKELAPYDPDWFYVRCA+I
Sbjct: 1   MPGVTVKDIDQHAVTKAVAVFLKKTGKLKVPDQMDIIKTAKFKELAPYDPDWFYVRCASI 60

Query: 222 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGG 401
           LRH+Y RSP GV ++TKI+GGRKRNGV PSHFCR++   ARKALQ+LE  +LVEK  DGG
Sbjct: 61  LRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAARKALQALEHARLVEKHPDGG 120

Query: 402 RILTTQGXRXLDRI 443
           R L++ G R LDRI
Sbjct: 121 RKLSSIGQRDLDRI 134


>AY119257-1|AAM51117.1|  155|Drosophila melanogaster SD22440p
           protein.
          Length = 155

 Score =  169 bits (412), Expect = 2e-42
 Identities = 79/134 (58%), Positives = 97/134 (72%)
 Frame = +3

Query: 42  MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 221
           M  VTVK+++Q  + K +AA LKK+GK+ VPE    +KT +FKE AP D DWFY RCA+I
Sbjct: 1   MPGVTVKEIDQHVLTKNMAAFLKKSGKIFVPEQAVYMKTGKFKETAPTDDDWFYTRCASI 60

Query: 222 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGG 401
           +RH+Y+RSP GV   TK++ GRKRNGV PS  CRSS    RKALQ+LEA  +VE+  DGG
Sbjct: 61  MRHLYLRSPAGVGAFTKVYSGRKRNGVRPSKHCRSSDGCIRKALQALEAANMVERHPDGG 120

Query: 402 RILTTQGXRXLDRI 443
           R LT QG R LDRI
Sbjct: 121 RKLTPQGQRNLDRI 134


>AE014297-3411|AAN13960.1|  155|Drosophila melanogaster CG5338-PB
           protein.
          Length = 155

 Score =  169 bits (412), Expect = 2e-42
 Identities = 79/134 (58%), Positives = 97/134 (72%)
 Frame = +3

Query: 42  MRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAI 221
           M  VTVK+++Q  + K +AA LKK+GK+ VPE    +KT +FKE AP D DWFY RCA+I
Sbjct: 1   MPGVTVKEIDQHVLTKNMAAFLKKSGKIFVPEQAVYMKTGKFKETAPTDDDWFYTRCASI 60

Query: 222 LRHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGG 401
           +RH+Y+RSP GV   TK++ GRKRNGV PS  CRSS    RKALQ+LEA  +VE+  DGG
Sbjct: 61  MRHLYLRSPAGVGAFTKVYSGRKRNGVRPSKHCRSSDGCIRKALQALEAANMVERHPDGG 120

Query: 402 RILTTQGXRXLDRI 443
           R LT QG R LDRI
Sbjct: 121 RKLTPQGQRNLDRI 134


>AJ271740-1|CAB93524.1| 16215|Drosophila melanogaster D-Titin protein.
          Length = 16215

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +3

Query: 27   PTQGKMRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDL 149
            P + K+  V ++ VE+ K  + V    +KT KVK P+H DL
Sbjct: 6143 PEEVKLEEVDLQHVEK-KEDEIVQEEKRKTRKVKKPKHEDL 6182


>AE014296-405|AAG22226.2| 18074|Drosophila melanogaster CG1915-PC,
            isoform C protein.
          Length = 18074

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +3

Query: 27   PTQGKMRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDL 149
            P + K+  V ++ VE+ K  + V    +KT KVK P+H DL
Sbjct: 6143 PEEVKLEEVDLQHVEK-KEDEIVQEEKRKTRKVKKPKHEDL 6182


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,904,699
Number of Sequences: 53049
Number of extensions: 464906
Number of successful extensions: 1094
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 2053700352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)