Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25b01
(702 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30D10.08 |mgm101||mitochondrial nucleoid protein|Schizosacch... 30 0.37
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 29 0.85
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 28 1.1
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce... 28 1.5
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2... 27 2.6
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 27 3.4
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 26 4.5
SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces... 26 6.0
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy... 26 6.0
SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomy... 25 7.9
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce... 25 7.9
>SPBC30D10.08 |mgm101||mitochondrial nucleoid
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 267
Score = 29.9 bits (64), Expect = 0.37
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -2
Query: 416 SSVLLKTDNRGYSLYCHDRTCLLKTGSRDYLLCYHDQTSRQKTGSRGYFQCCHD 255
++V K+ +R Y+L CH R + G + Y T+ + S +CC D
Sbjct: 162 TNVTSKSVSREYALVCHGRLVSVARGEQTYFDPEGIATASEGCKSNALMRCCKD 215
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 28.7 bits (61), Expect = 0.85
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = +2
Query: 470 PPQIRYNP---PHGPPMVYPVYHGTPPTYVY-QAQNSGSK 577
P ++Y P P P YPVYH TP T + SGS+
Sbjct: 405 PNMVQYGPILQPGYVPQYYPVYHQTPYTQNFPNMSRSGSQ 444
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 338 YPSSGGMSGHGNTGSSHGYPSSGGQSYP 421
Y ++GG +G NT + YPSS G + P
Sbjct: 1519 YYTTGGFTGGNNTNVTGLYPSSAGANKP 1546
>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -2
Query: 215 TLTIRRDQKVLRTLDTNV-CFHHRISWMSH 129
T+ IRRDQ V+ T D FH W++H
Sbjct: 194 TVVIRRDQSVVYTGDVGTNFFHSPTKWITH 223
>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 479
Score = 27.1 bits (57), Expect = 2.6
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Frame = +1
Query: 349 RRHV---RSWQYRE*PRLSVFRRTELPKNDSYYNNTQ-PLSLQSPATNKIQSAPRPTNGL 516
RRH S + ++ PRLS +R L KND+ N+Q P + S A IQS P
Sbjct: 98 RRHTPQTNSQKSQKTPRLSSNKRRTL-KNDAKQRNSQSPGTDTSDANLTIQSIEAPRRA- 155
Query: 517 PSLPRNPSDLRLPGAKLWKQIRNA 588
P+ SD P + IR++
Sbjct: 156 ---PQRLSDFFTPDGRRVSNIRDS 176
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 427 DSYYNNTQPLSLQSPATNKIQSAPRPTNGLPSLPRNPSD 543
DS + T+ L++Q TN+I+ P T LP+ PS+
Sbjct: 738 DSGLSKTERLTIQQ--TNEIKHVPTNTTSSVKLPQQPSN 774
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Frame = +2
Query: 467 PPPQIRY---NPPHGPPMVYPVYHGT--PPTYVYQA 559
PP Q + PPH PP +P +H PP Y +Q+
Sbjct: 164 PPTQHHHPHTRPPHHPP--HPHFHNNNYPPPYCFQS 197
>SPAC3H8.04 |||chromosome segregation protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 338
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +1
Query: 406 RTELPKNDSYYNNTQPLSLQSPATNKIQSAPRPTNGL 516
R K+D N P + P+ ++Q R TNGL
Sbjct: 209 RLRSQKSDKVMNKGYPFGYRIPSVGQLQLILRQTNGL 245
>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 656
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -2
Query: 512 PLVGRGADCILFVAGDCSDNGCVLL*YESFLGSSVL 405
PL+ R L G+ S+ VLL +SF+G+ VL
Sbjct: 259 PLISRHGRYKLQTPGNASNGKAVLLLLKSFVGTGVL 294
>SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 488 NPPHGPPMVYPVYHG 532
N HGPPMV+P G
Sbjct: 289 NADHGPPMVFPAPFG 303
>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 681
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 466 SPATNKIQSAPRPTNGLPSLPRNP 537
+P N + S+P + PSLP NP
Sbjct: 409 TPQINVVPSSPSKSQSGPSLPANP 432
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,745,750
Number of Sequences: 5004
Number of extensions: 55607
Number of successful extensions: 201
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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