Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25a19
(669 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0178 + 6195402-6199158,6199438-6200003 31 1.1
04_04_1090 - 30764340-30764704,30765092-30765204,30765414-307656... 30 1.9
05_05_0080 - 22243175-22243226,22243342-22243389,22243485-222435... 29 2.5
12_01_0082 - 662016-663215 29 3.3
09_04_0170 + 15310240-15310397,15310523-15310605,15310689-153106... 29 4.4
02_04_0628 + 24589313-24589472,24589604-24589765,24589850-245899... 29 4.4
04_04_0827 - 28457858-28458028,28458513-28458669,28458984-284590... 28 7.7
>03_02_0178 + 6195402-6199158,6199438-6200003
Length = 1440
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 9/53 (16%)
Frame = +3
Query: 531 SESLELPVAEQPSPSSAY--NAESFEQSVG-------VNQPSAAGTKRKLDEY 662
SESL+L Q PSS++ N+E F SV V+ PS + T++ LD Y
Sbjct: 799 SESLDLATCSQMLPSSSFRTNSEGFTGSVSLTNSQTFVHNPSCSLTQQSLDNY 851
>04_04_1090 -
30764340-30764704,30765092-30765204,30765414-30765638,
30766432-30766553,30766617-30767174,30769207-30769477,
30772175-30773256
Length = 911
Score = 29.9 bits (64), Expect = 1.9
Identities = 31/109 (28%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
Frame = +3
Query: 327 DKQQPNDYLNYYNNPTPDGADTVVSDSETAAASNFLASVNSLTDDNDIMECLLKTTDNLG 506
+K+ + L + PTP D + + TAA S+ +A+V N + L+ G
Sbjct: 445 EKKNADQILKPRHKPTPRDLDLMFTSVSTAAVSS-MATVEMEDFSNQQLWVLILLMILGG 503
Query: 507 EAVSS--AYYSESLELPVAE---QPSPSSAYNAESFEQSVGVNQPSAAG 638
E S A + + E E + SPS+ N ESF+ NQ S+ G
Sbjct: 504 EVSISMLALHFNNAETNTNEVLPKRSPSTRRNIESFDAVNDSNQNSSQG 552
>05_05_0080 -
22243175-22243226,22243342-22243389,22243485-22243540,
22243752-22243819,22244712-22244773,22245166-22245214,
22245818-22245899,22245987-22246064,22246441-22246499,
22246727-22246805,22246946-22247218
Length = 301
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/66 (24%), Positives = 30/66 (45%)
Frame = +3
Query: 261 ASYTSAPTPSRASFDNGYSEFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAASNFLAS 440
A S+ P+ ++ G + QP+ YLN + P+G +V D A +A+
Sbjct: 175 AENASSVLPATKTYHLGLRRDEETLQPSIYLNNLPDKIPEGTRVLVVDPMLATGGTIVAA 234
Query: 441 VNSLTD 458
++ L +
Sbjct: 235 IDLLVE 240
>12_01_0082 - 662016-663215
Length = 399
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -2
Query: 128 RHYIFLDVQHVTAGSYHVALLVINHLYYPARKQA 27
R ++ L V++ +G Y + + NHL+YP+ + A
Sbjct: 3 RRFLNLVVENARSGLYSLRRIPANHLFYPSTRAA 36
>09_04_0170 +
15310240-15310397,15310523-15310605,15310689-15310697,
15310852-15310940,15311514-15311587,15311731-15311781,
15311887-15311963,15313865-15314463
Length = 379
Score = 28.7 bits (61), Expect = 4.4
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +3
Query: 231 QTTMTQINFNASYTSAPTPSRASFDNGYSEFCDKQQPNDYLNYYNNPTPDGA 386
+TT T +S S+P+P +A+ D+G S C P D Y+ DGA
Sbjct: 302 ETTTTSSTTTSS--SSPSPPQATKDDGASPQC--SFPEDIQTYFGCAAEDGA 349
>02_04_0628 +
24589313-24589472,24589604-24589765,24589850-24589983,
24590108-24590275,24590481-24590562,24590734-24591512
Length = 494
Score = 28.7 bits (61), Expect = 4.4
Identities = 24/94 (25%), Positives = 46/94 (48%)
Frame = +3
Query: 111 QENIMTSNCASSPYSCEATSACAEAQQLQVDIGGDTIVNNQTTMTQINFNASYTSAPTPS 290
+ENI S+ + E+ + AE +Q G +V+ T+ ASY + TP+
Sbjct: 192 KENINQETSTSNQHEYESNPSDAEPKQKGTPEG--LLVS-----TEGGDQASYVKSSTPT 244
Query: 291 RASFDNGYSEFCDKQQPNDYLNYYNNPTPDGADT 392
+SFD+ + ++ +D+ +++ T D +DT
Sbjct: 245 TSSFDSELQKGGNRLDSSDHRGNFSS-TTDRSDT 277
>04_04_0827 -
28457858-28458028,28458513-28458669,28458984-28459083,
28459204-28459231,28459321-28459396,28461276-28461355,
28461642-28461805,28461897-28462056,28462154-28462277,
28462901-28463941,28464141-28464259,28464512-28464823,
28465222-28465425,28466068-28466751,28467301-28467474
Length = 1197
Score = 27.9 bits (59), Expect = 7.7
Identities = 22/94 (23%), Positives = 41/94 (43%)
Frame = +3
Query: 378 DGADTVVSDSETAAASNFLASVNSLTDDNDIMECLLKTTDNLGEAVSSAYYSESLELPVA 557
D + T S+ A S +S + +DI + + DN+ ++ S+Y + S E +
Sbjct: 506 DASSTSQESSDKVDALESSESSSSYSSIDDIEDEIDTACDNMPSSMFSSYRASSGEAKCS 565
Query: 558 EQPSPSSAYNAESFEQSVGVNQPSAAGTKRKLDE 659
+ +Y E+ S G+N S +K D+
Sbjct: 566 SVTTKLLSY--ETCSVSDGINPASPINENKKKDD 597
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,468,376
Number of Sequences: 37544
Number of extensions: 348479
Number of successful extensions: 1200
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1199
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -