Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25a19
(669 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82084-2|CAB04976.1| 536|Caenorhabditis elegans Hypothetical pr... 31 0.98
Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr... 30 1.3
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr... 30 1.3
X70836-1|CAA50184.1| 636|Caenorhabditis elegans Cytoplasmic int... 29 3.0
U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi... 29 3.0
U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi... 29 3.0
Z48638-8|CAA88568.1| 237|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z50070-4|CAA90394.2| 172|Caenorhabditis elegans Hypothetical pr... 28 6.9
AC024880-6|AAF60912.1| 547|Caenorhabditis elegans Hypothetical ... 28 6.9
>Z82084-2|CAB04976.1| 536|Caenorhabditis elegans Hypothetical
protein ZK1053.2 protein.
Length = 536
Score = 30.7 bits (66), Expect = 0.98
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = +3
Query: 504 GEAVSSAYYSESLELPVAEQPSPSSAYNAESFEQSV 611
GEAV S+ SL LPV E PSS +SF Q++
Sbjct: 92 GEAVKSSQLPSSLYLPVKESSKPSS-NPCDSFRQAI 126
>Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical
protein W06A7.3f protein.
Length = 2488
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +3
Query: 378 DGADTVVSDSETAAASNFLASVNSLTDDN--DIMECLLKTTDNLGEAVSSAYYSESLE-- 545
D D D T+ S + DDN + +E L+TT+ G+A +Y ++E
Sbjct: 760 DPTDPETVDETTSKISENMPKAPDTEDDNATEFIEAGLETTEAFGDAEHVSYLDANIEKL 819
Query: 546 LPVAEQPSP 572
+ +A++P P
Sbjct: 820 VAMADEPLP 828
>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical
protein W06A7.3c protein.
Length = 2484
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +3
Query: 378 DGADTVVSDSETAAASNFLASVNSLTDDN--DIMECLLKTTDNLGEAVSSAYYSESLE-- 545
D D D T+ S + DDN + +E L+TT+ G+A +Y ++E
Sbjct: 760 DPTDPETVDETTSKISENMPKAPDTEDDNATEFIEAGLETTEAFGDAEHVSYLDANIEKL 819
Query: 546 LPVAEQPSP 572
+ +A++P P
Sbjct: 820 VAMADEPLP 828
>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical
protein W06A7.3a protein.
Length = 2607
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +3
Query: 378 DGADTVVSDSETAAASNFLASVNSLTDDN--DIMECLLKTTDNLGEAVSSAYYSESLE-- 545
D D D T+ S + DDN + +E L+TT+ G+A +Y ++E
Sbjct: 760 DPTDPETVDETTSKISENMPKAPDTEDDNATEFIEAGLETTEAFGDAEHVSYLDANIEKL 819
Query: 546 LPVAEQPSP 572
+ +A++P P
Sbjct: 820 VAMADEPLP 828
>X70836-1|CAA50184.1| 636|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 636
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 204 IGGDTIVNNQTTMTQINFNASYTSAPTPSRASF 302
+GG T V +QTT T + N SY++ P SR +
Sbjct: 417 VGGSTRVISQTTRTHSSSNTSYSNVPA-SRGGY 448
>U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate
filament, c protein2, isoform a protein.
Length = 1128
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 204 IGGDTIVNNQTTMTQINFNASYTSAPTPSRASF 302
+GG T V +QTT T + N SY++ P SR +
Sbjct: 1043 VGGSTRVISQTTRTHSSSNTSYSNVPA-SRGGY 1074
>U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate
filament, c protein2, isoform b protein.
Length = 1248
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 204 IGGDTIVNNQTTMTQINFNASYTSAPTPSRASF 302
+GG T V +QTT T + N SY++ P SR +
Sbjct: 1043 VGGSTRVISQTTRTHSSSNTSYSNVPA-SRGGY 1074
>Z48638-8|CAA88568.1| 237|Caenorhabditis elegans Hypothetical
protein ZK892.6 protein.
Length = 237
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 180 LRKRTLPRTNMAMTHSLTSLYFPGRSARDCWFL 82
L+K P+TN M H L + G+S++ C F+
Sbjct: 21 LKKGNFPKTNDGMQHDLVNDVLGGKSSKYCPFI 53
>Z50070-4|CAA90394.2| 172|Caenorhabditis elegans Hypothetical
protein F43G6.3 protein.
Length = 172
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 169 DVASHEYGDDAQFDVIIFS 113
D++ +E GDDA FDV+I S
Sbjct: 11 DLSDNELGDDASFDVLISS 29
>AC024880-6|AAF60912.1| 547|Caenorhabditis elegans Hypothetical
protein Y97E10AR.4 protein.
Length = 547
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/63 (25%), Positives = 28/63 (44%)
Frame = +3
Query: 312 YSEFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAASNFLASVNSLTDDNDIMECLLKT 491
YSE D + + ++ ++ + D T + S ASVN +DND+ L+
Sbjct: 455 YSEAFDDKDEQEVIDLDDDDDEPDPNIQQPDDHTESTSKECASVNVKYEDNDVKLSLVSN 514
Query: 492 TDN 500
D+
Sbjct: 515 GDD 517
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,717,878
Number of Sequences: 27780
Number of extensions: 298199
Number of successful extensions: 1083
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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