Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc25a17
(188 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0510 + 24420402-24422582 30 0.23
06_01_0747 - 5587261-5587356,5587472-5587855,5588133-5588192,558... 28 0.91
04_04_0036 - 22307328-22308026 27 2.1
03_05_1160 + 30826972-30828375,30828641-30828754,30828901-308290... 27 2.1
06_03_0745 + 24109406-24109921 26 3.7
07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,557... 25 6.4
01_05_0597 - 23526705-23526749,23526794-23526905,23527068-235271... 25 6.4
06_03_0925 - 25992699-25992836,25992920-25993033,25993199-259933... 25 8.5
04_03_0595 - 17749777-17750921,17752022-17752043 25 8.5
>11_06_0510 + 24420402-24422582
Length = 726
Score = 30.3 bits (65), Expect = 0.23
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -1
Query: 179 CFLCSRPSDRSGPGCVSTDRNVRSKC-RCSNVSCSSHYDAQ 60
CF + P+D+ GC S + SKC RC S S + DA+
Sbjct: 506 CFYANHPADKDDDGCCSCSSS--SKCLRCLCSSSSGYPDAE 544
>06_01_0747 - 5587261-5587356,5587472-5587855,5588133-5588192,
5588428-5588484,5588663-5588800,5588901-5588966,
5589234-5589452,5589522-5589737,5589813-5589884,
5589952-5590205,5590356-5590525,5590840-5591029,
5592211-5592331,5592838-5592921,5593003-5593365,
5594530-5594724,5594938-5595933,5596329-5596370
Length = 1240
Score = 28.3 bits (60), Expect = 0.91
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = -1
Query: 182 FCFLCSRPSDRSGPGCVSTDRNVRSKCRCSNVSCSSHYD---AQLTAFFIDPRAK*STVQ 12
FC S P D+ C RNV S +CS V C + A+ F++D + ST++
Sbjct: 971 FCAEESLPKDKDT--CAICHRNVGSCLKCSTVDCQITFHPTCARDAGFYMDTKTIGSTLE 1028
>04_04_0036 - 22307328-22308026
Length = 232
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = -1
Query: 164 RPSDRSGPGCVSTDRNVR--SKCRCSNVSCSSHYD 66
RP R G + +R V+ CRC+ C HYD
Sbjct: 113 RPLPRHGTTETAAERQVQRGGPCRCACNYCGGHYD 147
>03_05_1160 +
30826972-30828375,30828641-30828754,30828901-30829032,
30830087-30830224
Length = 595
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = -1
Query: 173 LCSRPSDRSGPGCVSTDRNVRSKCRCSNVS--CSSHYDAQLTA 51
+C P + S G ++ D + S+C CS S S+H DA A
Sbjct: 347 MCPEPDNGSLDGRLTEDPPLSSRCDCSKQSEKKSAHLDANCCA 389
>06_03_0745 + 24109406-24109921
Length = 171
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Frame = -1
Query: 161 PSDRSGPGCVSTDRN----VRSKCRCSNVSCSSH 72
P R GP ST R CRC N+ C+ H
Sbjct: 103 PKGREGPNRCSTCRKRVGLTGFNCRCGNLYCAMH 136
>07_01_0733 +
5570084-5570282,5570395-5570600,5572484-5572624,
5572773-5572949,5573049-5573145,5573575-5573687,
5573774-5573896,5574004-5574075,5575340-5575432,
5575564-5575674,5575767-5575889,5576834-5576890,
5576939-5577022,5577140-5577214,5577418-5577554,
5577719-5577853,5579029-5579168,5579334-5579399,
5579732-5579838,5579910-5579990,5580064-5580138,
5580224-5580325,5581837-5582005,5582090-5582217,
5582596-5582679,5582779-5582879,5583729-5583882,
5583964-5584038,5584112-5584262,5584463-5585078,
5585427-5585487,5585874-5586019,5586104-5586287,
5586363-5586440,5586603-5586931,5587023-5587199,
5587571-5587667,5587742-5587897,5587962-5588198,
5588271-5588354,5588426-5588486,5588762-5588898
Length = 1912
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 56 LTARHS-VNCRTHLNIDISNAHCGPWRHIQDHSCLRAGC 169
L+A+ S +NC + + +IS H G H + + AGC
Sbjct: 725 LSAKQSLINCASDIPSEISQMHAGSVFHGYVCNIIEAGC 763
>01_05_0597 -
23526705-23526749,23526794-23526905,23527068-23527134,
23527439-23527566,23527638-23527750,23527827-23527972,
23528419-23528525,23528667-23528873,23530878-23531129,
23531324-23531406
Length = 419
Score = 25.4 bits (53), Expect = 6.4
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -1
Query: 152 RSGPGCVSTDRNVRSKCRCSNVSCSSHYDAQL 57
R GP T VR +CR +CS DA L
Sbjct: 7 RGGPRRSVTTEEVRGECRGGGSTCSCAADALL 38
>06_03_0925 -
25992699-25992836,25992920-25993033,25993199-25993310,
25993686-25993879,25994075-25994297,25994383-25994483,
25995108-25995137,25995182-25995337
Length = 355
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 185 FFCFLCSRPSDRSGPGCVSTDRNVRSKCRCSNVSCS 78
F C +C P R GP ++ RS +CS + S
Sbjct: 77 FACPVCYEPLIRKGPSGINLPSIYRSGFKCSKCNKS 112
>04_03_0595 - 17749777-17750921,17752022-17752043
Length = 388
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -3
Query: 168 QPALRQEWSWMCLHGPQCAFEMSMFKCVLQFTL*R 64
Q +RQ + HG Q +M C L+FTL R
Sbjct: 35 QRLIRQRDEYFQQHGGQLLSDMMKIDCNLEFTLYR 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,196,987
Number of Sequences: 37544
Number of extensions: 105229
Number of successful extensions: 303
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 14,793,348
effective HSP length: 42
effective length of database: 13,216,500
effective search space used: 264330000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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